tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 46
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 1
Total tRNAs 47
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 3012
Number of Codons: 948289

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
2
4
GCT
0.29
GCC
6.44
GCG
7
GCA
0.37
14.1%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
0.4
GGC
6.53
GGG
1.66
GGA
0.62
9.21%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.1
CCC
2.57
CCG
2.95
CCA
0.07
5.69%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.07
ACC
2.97
ACG
2.91
ACA
0.08
6.03%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
0.08
GTC
5.32
GTG
3.97
GTA
0.06
9.43%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0
TCC
1.89
TCG
1.95
TCA
0.07
AGT
0.04
AGC
1.5
 
 
 
 
5.45%
ArgACG
1
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
4
CGT
0.33
CGC
5.1
CGG
1.96
CGA
0.25
 
 
 
 
AGG
0.18
AGA
0.04
7.86%
LeuAAG
 
GAG
1
CAG
1
TAG
2
 
 
 
 
CAA
1
TAA
1
6
CTT
0.07
CTC
6.58
CTG
3.15
CTA
0.03
 
 
 
 
TTG
0.11
TTA
0.01
9.95%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
0.02
TTC
2.75
 
 
 
 
2.77%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
0.05
AAC
1.5
 
 
 
 
1.55%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
1.71
AAA
0.02
1.73%
AspATC
 
GTC
1
 
 
 
 
1
GAT
0.5
GAC
6.05
 
 
 
 
6.55%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
5.12
GAA
0.19
5.31%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.11
CAC
1.89
 
 
 
 
2%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
2.6
CAA
0.05
2.65%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
0.03
ATC
4.03
 
 
ATA
0.02
4.08%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
1.6
 
 
1.6%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0
TAC
1.79
 
 
 
 
1.79%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.23
TAG
0.08
TAA
0.01
0.32%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0
TGC
0.46
 
 
 
 
0.46%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.38
 
 
1.38%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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