tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 86
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 1
Predicted pseudogenes 0
Total tRNAs 87
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 2997
Number of Codons: 908916

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
 
CGC
 
TGC
4
4
GCT
2.25
GCC
0.28
GCG
0.27
GCA
2.29
5.09%
GlyACC
 
GCC
3
CCC
 
TCC
6
9
GGT
1.95
GGC
0.34
GGG
0.51
GGA
3.34
6.14%
ProAGG
 
GGG
 
CGG
 
TGG
3
3
CCT
1.27
CCC
0.11
CCG
0.14
CCA
1.27
2.79%
ThrAGT
 
GGT
1
CGT
1
TGT
3
5
ACT
2.23
ACC
0.29
ACG
0.23
ACA
2.21
4.96%
ValAAC
 
GAC
 
CAC
 
TAC
4
4
GTT
2.78
GTC
0.13
GTG
0.48
GTA
2.95
6.34%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
2
ACT
 
GCT
1
 
 
 
 
5
TCT
1.7
TCC
0.22
TCG
0.16
TCA
1.76
AGT
1.95
AGC
0.41
 
 
 
 
6.2%
ArgACG
1
GCG
 
CCG
 
TCG
1
 
 
 
 
CCT
1
TCT
4
7
CGT
0.24
CGC
0.04
CGG
0.01
CGA
0.12
 
 
 
 
AGG
0.36
AGA
2.49
3.26%
LeuAAG
1
GAG
 
CAG
 
TAG
2
 
 
 
 
CAA
1
TAA
3
7
CTT
1.87
CTC
0.1
CTG
0.09
CTA
0.87
 
 
 
 
TTG
0.74
TTA
5.01
8.68%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
3
 
 
 
 
3
TTT
3.71
TTC
0.55
 
 
 
 
4.26%
AsnATT
 
GTT
4
 
 
 
 
4
AAT
5.91
AAC
0.99
 
 
 
 
6.9%
Lys 
 
 
 
CTT
3
TTT
4
7
 
 
 
 
AAG
2.19
AAA
7.65
9.84%
AspATC
 
GTC
3
 
 
 
 
3
GAT
4.84
GAC
0.64
 
 
 
 
5.48%
Glu 
 
 
 
CTC
1
TTC
3
4
 
 
 
 
GAG
1.17
GAA
5.77
6.94%
HisATG
 
GTG
2
 
 
 
 
2
CAT
1.18
CAC
0.21
 
 
 
 
1.39%
Gln 
 
 
 
CTG
1
TTG
3
4
 
 
 
 
CAG
0.36
CAA
2.13
2.49%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
3
CAT
1
TAT
 
4
ATT
3.75
ATC
0.42
 
 
ATA
6.09
10.26%
fMet/Met 
 
 
 
CAT
3/2
 
 
5
 
 
 
 
ATG
2.48
 
 
2.48%
TyrATA
 
GTA
2
 
 
 
 
2
TAT
3.6
TAC
0.54
 
 
 
 
4.14%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.02
TAG
0.07
TAA
0.24
0.33%
CysACA
 
GCA
2
 
 
 
 
2
TGT
1
TGC
0.24
 
 
 
 
1.24%
Trp 
 
 
 
CCA
2
 
 
2
 
 
 
 
TGG
0.65
 
 
0.65%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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