tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 60
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 3
Total tRNAs 63
Intron Summary (tRNAs with introns: 1)
Pro AGG
1

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 3913
Number of Codons: 1133215

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
 
CGC
1
TGC
3
4
GCT
1.94
GCC
0.87
GCG
0.35
GCA
2.39
5.55%
GlyACC
 
GCC
2
CCC
1
TCC
2
5
GGT
1.68
GGC
0.79
GGG
0.76
GGA
3.1
6.33%
ProAGG
1
GGG
 
CGG
 
TGG
1
2
CCT
1.33
CCC
0.35
CCG
0.27
CCA
0.92
2.87%
ThrAGT
 
GGT
1
CGT
1
TGT
3
5
ACT
1.91
ACC
0.79
ACG
0.33
ACA
1.87
4.9%
ValAAC
 
GAC
 
CAC
 
TAC
4
4
GTT
2.06
GTC
0.3
GTG
1.11
GTA
2.92
6.39%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
1.7
TCC
0.75
TCG
0.2
TCA
1.46
AGT
1.78
AGC
0.69
 
 
 
 
6.58%
ArgACG
1
GCG
 
CCG
 
TCG
1
 
 
 
 
CCT
1
TCT
1
4
CGT
0.27
CGC
0.11
CGG
0.11
CGA
0.14
 
 
 
 
AGG
0.79
AGA
2.15
3.57%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
2
6
CTT
2.15
CTC
0.32
CTG
0.8
CTA
0.79
 
 
 
 
TTG
1.36
TTA
3.42
8.84%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
2
 
 
 
 
2
TTT
3.66
TTC
0.64
 
 
 
 
4.3%
AsnATT
 
GTT
2
 
 
 
 
2
AAT
5.17
AAC
1.02
 
 
 
 
6.19%
Lys 
 
 
 
CTT
1
TTT
2
3
 
 
 
 
AAG
2.38
AAA
6.6
8.98%
AspATC
 
GTC
3
 
 
 
 
3
GAT
4.46
GAC
0.88
 
 
 
 
5.34%
Glu 
 
 
 
CTC
1
TTC
2
3
 
 
 
 
GAG
1.62
GAA
5.38
7%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.14
CAC
0.3
 
 
 
 
1.44%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
1.15
CAA
1.46
2.61%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
2
CAT
2
TAT
 
4
ATT
3.61
ATC
0.68
 
 
ATA
5.64
9.93%
fMet/Met 
 
 
 
CAT
2/2
 
 
4
 
 
 
 
ATG
2.6
 
 
2.6%
TyrATA
 
GTA
2
 
 
 
 
2
TAT
3.4
TAC
0.7
 
 
 
 
4.1%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.06
TAG
0.08
TAA
0.21
0.35%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.9
TGC
0.35
 
 
 
 
1.25%
Trp 
 
 
 
CCA
2
 
 
2
 
 
 
 
TGG
0.73
 
 
0.73%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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