tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 94
Selenocysteine tRNAs (TCA) 1
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 1
Predicted pseudogenes 0
Total tRNAs 96
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 2717
Number of Codons: 858854

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
 
CGC
 
TGC
6
6
GCT
2.92
GCC
0.41
GCG
0.11
GCA
1.98
5.42%
GlyACC
 
GCC
4
CCC
 
TCC
7
11
GGT
1.87
GGC
0.34
GGG
0.54
GGA
3.88
6.63%
ProAGG
 
GGG
 
CGG
 
TGG
2
2
CCT
1.17
CCC
0.05
CCG
0.04
CCA
1.45
2.71%
ThrAGT
 
GGT
1
CGT
 
TGT
4
5
ACT
2.32
ACC
0.28
ACG
0.07
ACA
1.93
4.6%
ValAAC
 
GAC
 
CAC
 
TAC
4
4
GTT
3.41
GTC
0.14
GTG
0.37
GTA
2.62
6.54%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
 
TGA
2
ACT
 
GCT
3
 
 
 
 
6
TCT
1.5
TCC
0.22
TCG
0.04
TCA
2
AGT
1.81
AGC
0.54
 
 
 
 
6.11%
ArgACG
1
GCG
 
CCG
 
TCG
1
 
 
 
 
CCT
1
TCT
3
6
CGT
0.11
CGC
0.01
CGG
0
CGA
0.02
 
 
 
 
AGG
0.32
AGA
2.86
3.32%
LeuAAG
 
GAG
1
CAG
 
TAG
3
 
 
 
 
CAA
1
TAA
4
9
CTT
1.9
CTC
0.05
CTG
0.05
CTA
0.79
 
 
 
 
TTG
0.39
TTA
6.16
9.34%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
4
 
 
 
 
4
TTT
3.69
TTC
0.89
 
 
 
 
4.58%
AsnATT
 
GTT
4
 
 
 
 
4
AAT
5.26
AAC
1.12
 
 
 
 
6.38%
Lys 
 
 
 
CTT
2
TTT
6
8
 
 
 
 
AAG
2.81
AAA
6.46
9.27%
AspATC
 
GTC
3
 
 
 
 
3
GAT
4.8
GAC
0.71
 
 
 
 
5.51%
Glu 
 
 
 
CTC
 
TTC
3
3
 
 
 
 
GAG
1.85
GAA
6.25
8.1%
HisATG
 
GTG
2
 
 
 
 
2
CAT
1.04
CAC
0.25
 
 
 
 
1.29%
Gln 
 
 
 
CTG
 
TTG
2
2
 
 
 
 
CAG
0.27
CAA
1.69
1.96%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
4
CAT
2
TAT
 
6
ATT
3.17
ATC
0.43
 
 
ATA
5.93
9.53%
fMet/Met 
 
 
 
CAT
4/2
 
 
6
 
 
 
 
ATG
2.47
 
 
2.47%
TyrATA
 
GTA
3
 
 
 
 
3
TAT
3.3
TAC
0.66
 
 
 
 
3.96%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.02
TAG
0.07
TAA
0.25
0.34%
CysACA
 
GCA
2
 
 
 
 
2
TGT
0.8
TGC
0.23
 
 
 
 
1.03%
Trp 
 
 
 
CCA
2
 
 
2
 
 
 
 
TGG
0.69
 
 
0.69%
SelCys 
 
 
 
 
 
TCA
1
1
 
 
 
 
 
 
 
 
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