tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 43
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 2
Predicted pseudogenes 0
Total tRNAs 45
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 2412
Number of Codons: 802248

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
 
TGC
2
3
GCT
0.95
GCC
7.11
GCG
4.61
GCA
0.84
13.51%
GlyACC
 
GCC
2
CCC
1
TCC
1
4
GGT
0.86
GGC
5.45
GGG
1.45
GGA
0.22
7.98%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.34
CCC
2.29
CCG
2.53
CCA
0.47
5.63%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.21
ACC
2.91
ACG
1.3
ACA
0.2
4.62%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
0.34
GTC
1.83
GTG
4.75
GTA
0.18
7.1%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0.1
TCC
0.58
TCG
1.3
TCA
0.15
AGT
0.2
AGC
2.6
 
 
 
 
4.93%
ArgACG
1
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
4
CGT
0.42
CGC
5.36
CGG
1.11
CGA
0.16
 
 
 
 
AGG
0.12
AGA
0.05
7.22%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
0.3
CTC
2.39
CTG
6.93
CTA
0.26
 
 
 
 
TTG
2.09
TTA
0.07
12.04%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
1.54
TTC
1.71
 
 
 
 
3.25%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
0.3
AAC
2.03
 
 
 
 
2.33%
Lys 
 
 
 
CTT
 
TTT
1
1
 
 
 
 
AAG
1.59
AAA
1.03
2.62%
AspATC
 
GTC
1
 
 
 
 
1
GAT
1.22
GAC
3.56
 
 
 
 
4.78%
Glu 
 
 
 
CTC
 
TTC
1
1
 
 
 
 
GAG
3.39
GAA
1.93
5.32%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.37
CAC
2.18
 
 
 
 
2.55%
Gln 
 
 
 
CTG
 
TTG
1
1
 
 
 
 
CAG
3.39
CAA
1.71
5.1%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
2
CAT
 
TAT
 
2
ATT
0.56
ATC
3.3
 
 
ATA
0.1
3.96%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
2.07
 
 
2.07%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0.3
TAC
1.65
 
 
 
 
1.95%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.19
TAG
0.04
TAA
0.07
0.3%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.1
TGC
0.91
 
 
 
 
1.01%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.56
 
 
1.56%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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