Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

Ala tRNAs
>>>>>>>..>>>.>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GGGGCTATAGCT.CAGCTGGGA.GAGCGTCGCGCTGGCAGCGCGAAG...........GtCGTCGGTTCGAGCCCGAC.TAGCTCCA... tRNA-Ala-GGC-1-1 Sc: 71.1 >>>>>>>..>>>.>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GGGGCTATAGCT.CAGCTGGGA.GAGCGCCTGGATCGCACCCAGGAG...........GtCGCCGGTTCGAGCCCGGC.TAGCTCCA... tRNA-Ala-CGC-1-1 Sc: 73.6 >>>>>>>..>>>.>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GGGGGCGTAGTGcTAAC.GGGA.ACACGCCGCCTTTGCAAGGCGGA............GtTGGGGGTTCGATTCCCCC.CGCCTCCA... tRNA-Ala-TGC-1-1 Sc: 66.4
Arg tRNAs
>>>.>>>>..>>>>............<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCG.CCCGTAGCTCAGCTGGAt.A..GAGCGTCGGTCTACGGAACCGAAG...........GtCAGAGGTTCGAATCCTCTCGGGCGCG... tRNA-Arg-ACG-1-1 Sc: 79.8 >>>.>>>>..>>>>............<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCG.CCCGTAGCTCAGT.GGAt.A..GAGCGCTCGCCTCCGGAGCGAGAG...........GtCGCAGGTTCGAATCCTGCCGGGCGCG... tRNA-Arg-CCG-1-1 Sc: 83.5 >>>.>.>...>>................<<.>>.>>.......<<.<<................>>>>>.......<<<<<.<.<<<<.... GGAgCAGCTGGCG..GC.GGCgtA..GGGCTCT.GCCTCCGGAGCGAGAG...........GtCGCGGGTTCGAACCCCGCCCCGTCCG... tRNA-Arg-CCG-2-1 Sc: 27.2 >>>.>>>>..>>>>............<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCC.CCGGTAGCTCAGCTGGAt.A..GAGCGACTCCCTCCTAAGGAGTAG...........GcCGCAGGTTCGACTCCTGCTCGGGGCA... tRNA-Arg-CCT-1-1 Sc: 81.6 >>>.>>>>..>>>>............<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GCG.CGAGTAGCTCAATTGGT..A..GAGCACCGGCCTTCTAAGCCGATG...........GtTGCGGGTTCGAGCCCCGTCTCGCGTG... tRNA-Arg-TCT-1-1 Sc: 77.4
Asn tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TCCCCGGTAGCTCAATTGGCAGAGCATTCGGCTGTTAACCGAAGG...........GtTGTTGGTTCGAGTCCAACCCGGGGAG... tRNA-Asn-GTT-1-1 Sc: 74.4
Asp tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGGCGTAGCTCAGTTGGTtAGAGCGCCGGCCTGTCACGCCGGAG...........GtCGCGGGTTCGAGTCCCGTCGCTCCCG... tRNA-Asp-GTC-1-1 Sc: 85.8
Cys tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGCGACGTGGCGGAGTGGCT.ACGCAGCGGCCTGCAAAGCCGTGT...........ACACCGGTTCGATTCCGGTCGTCGCCT... tRNA-Cys-GCA-1-1 Sc: 70.1
Gln tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... TGCGGGATCGTCTAATGGCA.AGACACTCGGCTCTGGACCGGGTA...........ATCGGGGTTCGAATCCCTGTCCCGCAG... tRNA-Gln-CTG-1-1 Sc: 54.0 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... TGGGGGGTCGTCTAATGGCA.AGACTCCGGCCTTTGGAGCCGGCT...........ATCCGGGTTCGAGTCCCGGCCCCCCAG... tRNA-Gln-TTG-1-1 Sc: 59.8
Glu tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GCCGCTATCGTCTAGGGGActA.GGACGCCGCCCTCTCACGGCGGAA...........ACCGGGGTTCGAATCCCCGTAGCGGTA... tRNA-Glu-CTC-1-1 Sc: 58.1 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GCCCCCATGGTGTAGCGGTt.A.GCACGCCAGCCTTTCACGCTGGTA...........GCGGGGGTTCGATTCCCCCTGGGGGTA... tRNA-Glu-TTC-1-1 Sc: 69.8
Gly tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGATGTAGCTCAGTTGGCtA.GAGCGTCTGCTTGCCATGCAGAAG...........GtCGAGGGTTCGAGTCCCTTCATCCGCT... tRNA-Gly-GCC-1-1 Sc: 80.8 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGACGTAGCTCAGTTGGT.A.GAGCGCAAGCTTCCCAAGCTTGAG...........GtCGCGGGTTCGAGGCCCGTCGTCCGCT... tRNA-Gly-CCC-1-1 Sc: 77.9 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGCGAAGTGTTGT.GGT.T.GCACAGGAGCCTTCCAAGCTCTTA...........G.GGCGGGTTCGATTCCCGTCGCCCGCT... tRNA-Gly-TCC-1-1 Sc: 59.4
His tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTGGGCGTAGCTCAGTTGGTAGAGCTCCTGGTTGTGGTCCAGGCG...........GtCGCGGGTTCAAGTCCCGTCGCTCACC... tRNA-His-GTG-1-1 Sc: 65.2
Ile tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGATTAGCTCAGTCGGTtAGAGCGCTTCTCTGATAAGGAAGAG...........GtCCCTGGTTCGAATCCAGGATCGCCCA... tRNA-Ile-GAT-1-1 Sc: 76.8
Leu tRNAs
>>>>>>>..>>>..........................................................................................................................................................<<<.>>>>>.......<<<<<..>>>>.............<<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGTCGTGGCGGAATTGGTaG...............................................................................................................................................ACGCGCAAGGTTGAGGGCCTTGTGGGGG...ATAA......CCCCG.TGGAGGTTCGAGTCCTCT.CGACCGCA... tRNA-Leu-GAG-1-1 Sc: 66.9 >>>>>>>..>>>..........................................................................................................................................................<<<.>>>>>.......<<<<<..>>>>.............<<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGCTGTGGCGGAACTGGTaG...............................................................................................................................................ACGCGCGGCGTTCAGGTCGCCGT.GAGG...GAAA......CCTCG.TGGAGGTTCGAGTCCTCT.CAGCCGCA... tRNA-Leu-CAG-1-1 Sc: 67.3 >>>>>>>..>>>..........................................................................................................................................................<<<.>>>>>.......<<<<<..>>>>.............<<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGGTGTGGTGAAAC.GGTaG...............................................................................................................................................ACACGCCGGCCTTAGGAGCCGGTTGGCCAG.GTA.....GAGGCCT.TGGGGGTTCGAATCCCTC.CGCCCGCA... tRNA-Leu-TAG-1-1 Sc: 66.2 >>>>>>>..>>>>........................................................................................................................................................<<<<.>>>>>.......<<<<<..........................>>>>>.......<<<<<.<<<<<<<.... GCGTCCGTAGCTCAACTGGTcAacggcgaatcgaataggcacgtgcgcgaaggcgagcgccagccctcaagccgaagggatcgagaccaaatcttccccttatcggtggctgatgccgcgcaagcggcccttgctggatcgcacacagccgaaagtaagctcaa.GAGCTCCAGGTTTAGGGCCTGGAA.....................GaTGCGGGTTCGAATCCCGT.CGGGCGCA... tRNA-Leu-TAG-2-1 Sc: 45.8 >>>>>>>..>>>..........................................................................................................................................................<<<.>>>>>.......<<<<<..>>>>.............<<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGCGGTGGCGGAAT.GGTaG...............................................................................................................................................ACGCGGCGGCCTCAAAAGCCGCT.GAGC...GAAA......GCTCG.TGAGGGTTCGAGTCCCTC.CCGCCGTA... tRNA-Leu-CAA-1-1 Sc: 76.6 >>>>>>>..>>>..........................................................................................................................................................<<<.>>>>>.......<<<<<..>>>>..>.......<..<<<<...>>>>>.......<<<<<.<<<<<<<.... GCCCGGGTGGCGGAACTGGCaG...............................................................................................................................................ACGCCGCCGACTTAAAATCGGCT.GTCCCCC.......GACGGACG.TGCGGGTTCGATCCCCGC.CCCGGGCA... tRNA-Leu-TAA-1-1 Sc: 67.1
Lys tRNAs
>>>>>>>..>>>>...........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GGGCCGTTAGCTCAATTGGC..A.GAGCAGGGGACTCTTAATCCCAAG...........GtTGAAGGTTCGATTCCTTCACGGCCCA... tRNA-Lys-CTT-1-1 Sc: 77.6 >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCGTCTAGCTCATC.GGGttA.GAGCACCGGACTTTTAATCCGGCG...........G.GCTGGGTTCGAGTCCCAGGGCGCGCA... tRNA-Lys-TTT-1-1 Sc: 67.5
Met/Ile2 tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCTGGGTAGCTCAGCT.GGTtAGAGCGCAGCACTCATAATGCTGAG...........GtCGGGAGTTCGAGTCTCCCCCCAGGTA... tRNA-Met-CAT-1-1 Sc: 77.9 .>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGGTGGAGCAGTCtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGCGGGTTCGAATCCCGCCCCCGCTA... tRNA-fMet-CAT-1-1 Sc: 77.6 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCCCAGTAGCTCAGTT.GGTtAGAGCAGCGGACTCATAATCCGTTG...........GtCCGAGGTTCGAGTCCTCGCTGGGCCA... tRNA-Ile2-CAT-1-1 Sc: 84.2
Phe tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCCACTTAGCTCAGTTGGTAGAGCACACGACTGAAAATCGTGGT...........GtCCCCAGTTCGAATCTGGGAGTGGCCA... tRNA-Phe-GAA-1-1 Sc: 77.0
Pro tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGGAGTGGCGCAGTCtGGTAGCGCACCCGGCTGGGGGCCGGGCG...........GtCGCAGGTTCAAATCCTGTCTCCCCGA... tRNA-Pro-GGG-1-1 Sc: 70.3 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGGCGTGGCGCAGCCtGGTAGCGCGCTCCGTTCGGGTCGGAGAG...........GtCCCGAGTTCAAATCTCGGCGCCCCGA... tRNA-Pro-CGG-1-1 Sc: 64.9 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGGCGTGGCGCAGCCtGGTAGCGCGCCTGCTTTGGGAGCAGGAG...........GtCCTCGGTTCGAATCCGGGCGCCCCGA... tRNA-Pro-TGG-1-1 Sc: 72.2
SeC tRNAs
Ser tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAGAGGTGCCGGAGCGGCtgA.ACGGGCACGACTGGAAATCGTGTGACCGGG.GTAA..CTCGGTCCGAGGGTTCGAATCCCTC..TCTCTCCG... tRNA-Ser-GGA-1-1 Sc: 80.4 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>>.....<<<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAGGGGTGGCAGAGCGGTtgA.ATGCGGCGGTCTCGAAAACCGTT.TCAGGGGTTAAgCCTCTGA.CGAGGGTTCGAATCCCTC..CCCCTCCG... tRNA-Ser-CGA-1-1 Sc: 85.7 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAGGGGTGGCGGAGCGGTtgA.ACGCACCGGTCTTGAAAACCGGC.ATGGGC.GAAA..GTCCAT.CGAGGGTTCGAATCCCTC..CCCCTCCG... tRNA-Ser-TGA-1-1 Sc: 88.9 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGACAGGTGGCCGAGTGGCtgA.AGGCACTCGCCTGCTAAGCGAGTAAGGGGT.TCAC..GCTCCTTCGCGGGTTCGAATCCCGC..CCTGTCCG... tRNA-Ser-GCT-1-1 Sc: 85.7
Sup tRNAs
Thr tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCTCCTAGCTCAGTTGGTAGAGCACTTCCATGGTAAGGAAGGG...........GtCATCGGTTCGAGTCCGATGGAGGGCT... tRNA-Thr-GGT-1-1 Sc: 71.7 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGACGTAGCTCAGCTGGTAGAGCACTTCACTCGTAATGAAGGG...........GtCAGCGGTTCGAATCCGCTCGTCGGCT... tRNA-Thr-CGT-1-1 Sc: 82.0 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCGAGTAGCTCAGCTGGTAGAGCACCTGTCTTGTAAACAGGGG...........GtCAGGGGTTCGAGTCCCCTCTCGGGCT... tRNA-Thr-TGT-1-1 Sc: 84.9
Trp tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGGCCACTGGTGTATCGGTA.ACACGACGGTCTCCAAAACCGTAA...........CGCGAGGTTCGACTCCTCGGTGGCCCG... tRNA-Trp-CCA-1-1 Sc: 59.0
Tyr tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>.>.........<.<...>>>>>.......<<<<<<<<<<<<.... GGGCGGATGTCCGAGTGGTtaA.AGGAGACGGGCTGTAAACCCGTTGGCTC.......TGCCTaCGCAGGTTCGAATCCTGCTCCGCCCA... tRNA-Tyr-GTA-1-1 Sc: 72.2
Val tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGATTAGCTCAGCTGGGA.GAGCGCCGCCTCGACAAGGCGGAG...........GtCACTGGTTCGAGCCCAGTATCGCCCA... tRNA-Val-GAC-1-1 Sc: 73.3 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGACGCGTAGCTCAGT.GGGA.GAGCGCTCGCTTCACACGCGAGAG...........GtCGGTGGTTCGAAACCACCCGCGTCCA... tRNA-Val-CAC-1-1 Sc: 74.8 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGGTTAGCTCAGTTGGTA.GAGCACTCGCCTTACAAGCGAGAG...........GtCGCCGGTTCAAGCCCGGCACCGCCCA... tRNA-Val-TAC-1-1 Sc: 83.6