tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 46
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 1
Total tRNAs 47
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 5914
Number of Codons: 1991682

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
0.36
GCC
5.55
GCG
8.39
GCA
0.55
14.85%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
0.5
GGC
6.97
GGG
1.65
GGA
0.43
9.55%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.14
CCC
1.5
CCG
3.98
CCA
0.14
5.76%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.07
ACC
2.16
ACG
3.22
ACA
0.12
5.57%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
0.12
GTC
5.81
GTG
2.66
GTA
0.05
8.64%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0
TCC
0.98
TCG
2.04
TCA
0.09
AGT
0.06
AGC
1.61
 
 
 
 
4.78%
ArgACG
1
GCG
 
CCG
2
TCG
 
 
 
 
 
CCT
1
TCT
1
5
CGT
0.43
CGC
5.23
CGG
1.9
CGA
0.25
 
 
 
 
AGG
0.14
AGA
0.76
8.71%
LeuAAG
 
GAG
1
CAG
1
TAG
2
 
 
 
 
CAA
1
TAA
1
6
CTT
0.14
CTC
4.66
CTG
5.42
CTA
0.01
 
 
 
 
TTG
0.22
TTA
0
10.45%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
0.04
TTC
2.78
 
 
 
 
2.82%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
0.06
AAC
1.62
 
 
 
 
1.68%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
1.43
AAA
0.03
1.46%
AspATC
 
GTC
1
 
 
 
 
1
GAT
0.41
GAC
5.57
 
 
 
 
5.98%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
5.37
GAA
0.35
5.72%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.19
CAC
1.77
 
 
 
 
1.96%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
2.55
CAA
0.1
2.65%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
0.04
ATC
3.53
 
 
ATA
0.07
3.64%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
1.54
 
 
1.54%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0.1
TAC
1.7
 
 
 
 
1.8%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.21
TAG
0.08
TAA
0.01
0.3%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0
TGC
0.74
 
 
 
 
0.74%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.32
 
 
1.32%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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