tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 52
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 2
Total tRNAs 54
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 2249
Number of Codons: 711122

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
 
TGC
3
4
GCT
2.78
GCC
2.91
GCG
2.38
GCA
3.02
11.09%
GlyACC
 
GCC
3
CCC
1
TCC
1
5
GGT
2.4
GGC
3.1
GGG
0.92
GGA
1.43
7.85%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
1.13
CCC
1.06
CCG
1.11
CCA
1.54
4.84%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
1.26
ACC
2.62
ACG
1.22
ACA
0.97
6.07%
ValAAC
 
GAC
2
CAC
1
TAC
1
4
GTT
2.17
GTC
1.95
GTG
2.89
GTA
1.32
8.33%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
2
TGA
1
ACT
 
GCT
1
 
 
 
 
5
TCT
1.1
TCC
1.49
TCG
1.23
TCA
0.73
AGT
0.54
AGC
1.04
 
 
 
 
6.13%
ArgACG
2
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
5
CGT
1.81
CGC
2.37
CGG
0.59
CGA
0.8
 
 
 
 
AGG
0.22
AGA
0.19
5.98%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
1.76
CTC
2.17
CTG
1.93
CTA
0.91
 
 
 
 
TTG
2.06
TTA
0.63
9.46%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
1.54
TTC
1.81
 
 
 
 
3.35%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
1.15
AAC
1.89
 
 
 
 
3.04%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
1.98
AAA
1.59
3.57%
AspATC
 
GTC
2
 
 
 
 
2
GAT
2.99
GAC
2.82
 
 
 
 
5.81%
Glu 
 
 
 
CTC
2
TTC
1
3
 
 
 
 
GAG
2.71
GAA
3.14
5.85%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.98
CAC
1.44
 
 
 
 
2.42%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
1.85
CAA
1.63
3.48%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
2
CAT
1
TAT
 
3
ATT
2.24
ATC
3.06
 
 
ATA
0.33
5.63%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
2.24
 
 
2.24%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0.9
TAC
1.32
 
 
 
 
2.22%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.05
TAG
0.1
TAA
0.16
0.31%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.3
TGC
0.52
 
 
 
 
0.82%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.41
 
 
1.41%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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