tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 45
Selenocysteine tRNAs (TCA) 1
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 1
Total tRNAs 47
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 3532
Number of Codons: 1199217

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
 
TGC
3
4
GCT
2.01
GCC
2.57
GCG
0.78
GCA
2.29
7.65%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
2.19
GGC
1.6
GGG
1.23
GGA
2.11
7.13%
ProAGG
 
GGG
1
CGG
 
TGG
1
2
CCT
1.15
CCC
1.09
CCG
0.77
CCA
1.06
4.07%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
1.26
ACC
2.08
ACG
0.65
ACA
1.46
5.45%
ValAAC
 
GAC
1
CAC
 
TAC
1
2
GTT
2.49
GTC
1.43
GTG
1.54
GTA
1.23
6.69%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
 
TGA
1
ACT
 
GCT
1
 
 
 
 
3
TCT
1.1
TCC
1.42
TCG
0.49
TCA
1.19
AGT
1.32
AGC
0.99
 
 
 
 
6.51%
ArgACG
1
GCG
 
CCG
1
TCG
1
 
 
 
 
CCT
1
TCT
1
5
CGT
1.26
CGC
0.78
CGG
0.69
CGA
0.65
 
 
 
 
AGG
0.68
AGA
0.95
5.01%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
2
TAA
1
6
CTT
3.17
CTC
2.06
CTG
2.71
CTA
0.46
 
 
 
 
TTG
1.13
TTA
0.93
10.46%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
3.1
TTC
1.35
 
 
 
 
4.45%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
2.32
AAC
1.61
 
 
 
 
3.93%
Lys 
 
 
 
CTT
 
TTT
1
1
 
 
 
 
AAG
2.04
AAA
3.67
5.71%
AspATC
 
GTC
1
 
 
 
 
1
GAT
3.67
GAC
1.8
 
 
 
 
5.47%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
2.39
GAA
4.1
6.49%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.41
CAC
0.76
 
 
 
 
2.17%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
2.49
CAA
1.19
3.68%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
3
CAT
1
TAT
 
4
ATT
3.19
ATC
2.32
 
 
ATA
1.47
6.98%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
2.56
 
 
2.56%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
1.8
TAC
1.07
 
 
 
 
2.87%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.11
TAG
0.06
TAA
0.13
0.3%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.8
TGC
0.52
 
 
 
 
1.32%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.02
 
 
1.02%
SelCys 
 
 
 
 
 
TCA
1
1
 
 
 
 
 
 
 
 
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