Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

Ala tRNAs
>>>>>>>..>>>>...............<<<<...............>>>>>.......<<<<<................>.>>>.......<<<.<..<<<<<<<.... GGGGCTGTAGCTCAGTTGGG.A......GAGC..............GCTTGAATGGCATTCAAGAG...........GtCGTCGGTTCGATCCCGTC..CAGCTCCACCA tRNA-Ala-GGC-1-1 Sc: 74.5 >>>>>>>..>>>>...............<<<<...............>>>>>.......<<<<<................>>>>>.......<<<<<..<<<<<<<.... GGGGATGTAGCTCAGC.GGG.A......GAGC..............ACCGCGTTCGCAACGCGGGG...........GtCGAGGGTTCAAATCCCTT..CATCTCCACCA tRNA-Ala-CGC-1-1 Sc: 86.2 >>>.>.>...>>.................<<.................>>>>.......<<<<.................>>>>>.......<<<<<..<.<.<<<.... GGAAAAGCGTTTAAGG.CGTtG......AAATcattttacaactta.GCGCGTTCGCAACGCGGGG...........GtCGAGGGTTCAAATCCCTT..CATCTCCACCA tRNA-Ala-CGC-2-1 Sc: 32.7 >.>>.>>..>.....................<................>>>>.......<<<<.................>>>>>.......<<<<<..<<.<<.<.... GTAGCTG.AT....ACTGCT.G.cccc.CTGA..............AATGCGTTCGCAACGCGGGG...........GtCGAGGGTTCAAATCCCTT..CATCTCCACCA tRNA-Ala-CGC-3-1 Sc: 26.1 >>>>>>>..>>>>...............<<<<...............>>>>>.......<<<<<................>.>>>.......<<<.<..<<<<<<<.... GGGGGTGTAGCTCAGCTGGG.A......GAGC..............ACCTGCTTTGCAAGCAGGGG...........GtCATCGGTTCGAATCCGTT..CACCTCCACCA tRNA-Ala-TGC-1-1 Sc: 84.5
Arg tRNAs
>>>..>>>>..>>>>..............<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCG..CCCTTAGCTCAGCTGGAtA.....GAGCGTCTGACTACGGATCAGAAG...........GtCGGGAGTTCGAATCTCTTAGGGCGCACCA tRNA-Arg-ACG-1-1 Sc: 84.3 >>>..>>>>..>>>>..............<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCG..CCCGTAGCTCAGTAGGAtA.....GAGCGCAACACTCCGGATGTTGAG...........GtCGAACGTTCGAATCGTTTCGGGCGCACCA tRNA-Arg-CCG-1-1 Sc: 75.6 >>>..>>>>..>>>>..............<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GCG..CCCGTAGCTCAGTTGGAtA.....GAGCGCCGGACTTCGAATCCGTAG...........GtCGCAGGTTCGAGTCCTGCCGGGCGCGCCA tRNA-Arg-TCG-1-1 Sc: 89.3 >>>..>>>>..>>>>..............<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GCC..CCCGTAGCTCAGT.GGAtA.....GAGCGACGGATTCCTAATCCGCAG...........GtCGCAAGTTCGATCCTTGCCGGGGGCACCA tRNA-Arg-CCT-1-1 Sc: 79.6 >>>..>>>>..>.>>..............<<.<...>>>.......<<<..................>>>>>.......<<<<<<<<<<<<.... GTCttTTCGTGTCTA....GGTaA....gTAAAAAGGGATTCCTAATCCGCAG...........GtCGCAAGTTCGATCCTTGCCGGGGGCACCA tRNA-Arg-CCT-2-1 Sc: 27.6 >>>..>>>>..>>>>..............<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCG..CCCGTAGCTCAGCTGGAtA.....GAGCAACGGACTTCTAATCCGTAG...........GtCACAGGTTCGAATCCTGTCGGGCGTGCCA tRNA-Arg-TCT-1-1 Sc: 87.8
Asn tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TCCCCGATAGCTCAATCGGCAGAGCGGGTGGCTGTTAACCACTAG...........GtTGTAGGTTCGAGTCCTACTCGGGGAGCCA tRNA-Asn-GTT-1-1 Sc: 78.7
Asp tRNAs
>>>>>>>.......>>>>...........<<<<......................................................>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGGCGTA.....GTTCAGTTGGTt.A.GAACG.....................................................CCGGCCTGTCACGCCGGAG...........GtCGCGAGTTCGAGTCTCGTCGCTCCCGCCA tRNA-Asp-GTC-1-1 Sc: 89.2 >>>>.>>.......>>...............<<.......................................................>>>>.......<<<<.................>>>>>.......<<<<<<<.<<<<.... GGGATCGTGaaggaCCGAAAC.GGActG.AAGGGgcttgaaatgactgaaatatcgaggcatgaggttgatatgattgacggggttcACGGCCTGTCACGCTGGAG...........GtCGCGAGTTCGAGTCTCGTCGCTCCCGCCA tRNA-Asp-GTC-2-1 Sc: 23.9
Cys tRNAs
>>>>>>.>..>>>...........<<<.>>>>>.......<<<<<.............................>>>>>.......<<<<<..<<<<<<<.... GGCGGC.TTAGCCAAGTGGTA..AGGCGACGGTCTGCAAAACCGTTA........................TaCGGCGGTTCAAATCCGCC..AGCCGCCTCCA tRNA-Cys-GCA-1-1 Sc: 82.7 >>>>>>.>..>.>>.........<<.<.>>>>>.......<<<<<...>>>>>>..........<<<<<<....>>.>>.......<<.<<..<<<<<<<.... GGGGGCaATGGTGCTG.GGC...GCCCCGCGGGCTGCAAACCCGTTGGCCCGGTctcGTAA...ACCGGGA...GGAGGTTCGATTCCCCT..TGCCCCCTCCA tRNA-Cys-GCA-2-1 Sc: 40.8
Gln tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TGGGGGATCGTCTAGCGGCA.GGACGGCGGGTTCTGGCCCCGTTA...........A.CCGAGGTTCGAATCCTCGTCCCCCAGCCA tRNA-Gln-CTG-1-1 Sc: 64.0 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TGGGGCGTCGTCAAGCGGTA.AGACACGGGTCTTTGGAACCCGCA...........TtCGGAGGTTCGAATCCTCCCGCCCCAGCCA tRNA-Gln-TTG-1-1 Sc: 73.5
Glu tRNAs
>>>>>>>..>>>>............<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGTCCCATCGTCTAGA..GGCctA.GGACACCGCCCTCTCACGGCGGAG...........ACAGGGGTTCGAAACCCCTTGGGACTGCCA tRNA-Glu-CTC-1-1 Sc: 60.8 >>>>>>>..>>>>............<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GTCCCCATCGTCTAGCCcGGCctA.GGACACCGGCCTTTCACGCCGGCG...........ACAGGGGTTCGAATCCCCTTGGGGACGCCA tRNA-Glu-TTC-1-1 Sc: 68.3
Gly tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGAATAACTCAGT.GGTA.GAGTGCAACCTTGCCAAGGTTGAA...........GtCGCGGGTTCAAATCCCGTTTCCCGCTCCA tRNA-Gly-GCC-1-1 Sc: 84.4 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGCATAACTCAGTTGGTA.GAGTGCAAGCTTCCCAAGCTTGAT...........GtCGCGGGTTCGAACCCCGTTGCCCGCTCCA tRNA-Gly-CCC-1-1 Sc: 83.4 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGAATAGCTCAGTTGGTA.GAGCGTCAGCCTTCCAAGCTGAAT...........GtCGCGGGTTCGAATCCCGTTTCCCGCTCCA tRNA-Gly-TCC-1-1 Sc: 92.8
His tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GAGGGCGTAGCTCAGTTGGCAGAGCACAGGGTTGTGGCCCCTGTG...........GcCGCGGGTTCGAGTCCCGCCGCTCTCCCCA tRNA-His-GTG-1-1 Sc: 79.8
Ile tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCTATAGCTCAGTTcGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGTTGGTTCAATTCCAACTAGGCCCACCA tRNA-Ile-GAT-1-1 Sc: 86.2
Leu tRNAs
>>>>>>>..>>>..................<<<...........................>>>>>........<<<<<..>>>>............<<<<...>>>>>.......<<<<<...<<<<<<<.... GCCGAAGTGGTGGAACTtG.GTa.G....ACAC..............A............CCATCTTGAGGG.GGTGGC.GGGC..GAAA......GCTCG.TGCCGGTTCGAGTCCGGC...CTTCGGCACCA tRNA-Leu-GAG-1-1 Sc: 63.5 >>>>>>>..>>>..................<<<...........................>>>>>........<<<<<..>>>..............<<<...>>>>>.......<<<<<...<<<<<<<.... GCCGAAGTGGCGGAAGT.G.GTa.G....ACGC..............G............CCAGGTTCAGGG.TCTGGTGGGC...GCAA.......GCCTgTAGGAGTTCGAGTCTCCT...CTTCGGCACCA tRNA-Leu-CAG-1-1 Sc: 66.8 >>>>>>>..>>>..................<<<...........................>>>>>........<<<<<..>>>..............<<<...>>>>>.......<<<<<...<<<<<<<.... GCGAGAGTGGCGGAATT.G.GCa.G....ACGC..............A............CCGGACTTAGGA.TCCGGC.GGG...GCAA.......CCCA.TGGGGGTTCGAGTCCCCC...CTCTCGCACCA tRNA-Leu-TAG-1-1 Sc: 81.1 >>>>>>>..>>>..................<<<...........................>>>>>........<<<<<..>>>>............<<<<...>>>>>.......<<<<<...<<<<<<<.... GCTCGGATGGCGGAATA.G.GCa.G....ACGC..............A............GTGGACTCAAAA.TCCACC.GATC..GCAA......GGTCG.TGTGAGTTCGACTCTCAC...TCCGAGCACCA tRNA-Leu-CAA-1-1 Sc: 70.1 >>>......>.>..................<.<...........................>>>>>........<<<<<.........................>>>>>.......<<<<<.......<<<.... AGGGAAATCGGTTAAA..GcGTtgA....TAGT..............AtatactgttagaTTGCCTTCACAC.GGCAGGG....................GtCGGAGGTTCAAATCCTCT...CCCGCCTACCA tRNA-Leu-CAA-2-1 Sc: 29.7 >>>.........................................................>>>>>........<<<<<.........................>>>>>.......<<<<<.......<<<.... AGG.....G.........G.GC..T......................A............TTGCCTTCACAC.GGCAGGG....................GtCGGAGGTTCAAATCCTCT...CCCGCCTACCA tRNA-Leu-CAA-3-1 Sc: 27.9 >>>........>..................<...............................>>>........<<<...........................>>>>>.......<<<<<.......<<<.... GGG.....A..TTAGCT.G.GTt.G....TA................A..............GCCTTCACAC.GGCAGGG....................GtCGGAGGTTCAAATCCTCT...CCCGCCTACCA tRNA-Leu-CAA-4-1 Sc: 22.9 >>>......>.>>................<<.<...........................>.>>>........<<<.<.........................>>>>>.......<<<<<.......<<<.... GGGGAATTGCAGAAAGAcG.GC..T....TCGGttctaagggcttct.............CAGCCTTCACAC.GGCAGGG....................GtCGGAGGTTCAAATCCTCT...CCCGCCTACCA tRNA-Leu-CAA-5-1 Sc: 22.5 >>>>>>...>>>..................<<<...........................>>..............<<.........................>>>>>.......<<<<<....<<<<<<.... TGGGAT.TAGCTG.GT..T.GT..A.....AGC...........................CT....TCGGGA.TGCAGGG....................GtCGCTGGTTCAAATCCAGT...CGTCCCGACCA tRNA-Leu-CAA-6-1 Sc: 22.3 >>>>>>>..>>>..................<<<...........................>>>>>........<<<<<..>>>..>........<..<<<...>>>>>.......<<<<<...<<<<<<<.... GCCTGAGTGGTGGAATA.G.GTa.G....ACAC..............A............AGGGACTTAAAA.TCCCTTGGGGCTT........GTCCCCG.TGACGGTTCGACTCCGTC...CTCAGGCACCA tRNA-Leu-TAA-1-1 Sc: 71.3
Lys tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCGTTAGCTCAACTGGTAGAGCAACTGACTCTTAATCAGTAG...........GtTTGGGGTTCGAGCCCCCGACGGCCCACCA tRNA-Lys-CTT-1-1 Sc: 80.1 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCGTTAACTCAGACGGTAGAGTATCTGCCTTTTAAGCAGAGA...........GtCGCTGGTTCGAGTCCAGCACGGCCCACCA tRNA-Lys-TTT-1-1 Sc: 85.9
Met/Ile2 tRNAs
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGGTGGAGCAGCCaGGT.AGCTCGTTGGGCTCATAACCCAAAG...........GtCGGAGGTTCAAATCCTCCCCCCGCTACCA tRNA-fMet-CAT-1-1 Sc: 77.4 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCGGTGTAGCTCAGTC.GGTtAGAGCATGCGGCTCATATCCGCAGT...........GtCCGGGGTTCAAATCCCTGCACCGCCACCA tRNA-Met-CAT-1-1 Sc: 76.8 >>>>>>>..>>>>..........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GGGCCCATAGCTCAGCT.GGT.AGAGCTCCCGGCTCATAACCGGTTG...........GtCCCTGGTTCGAATCCAGGTGGGCCCACCA tRNA-Ile2-CAT-1-1 Sc: 80.0
Phe tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGAGGTAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTTGT...........GtCGATGGTTCGATTCCGTCCCTCGGCACCA tRNA-Phe-GAA-1-1 Sc: 81.2
Pro tRNAs
>>>>>>>..>>>>............<<<<.>>>>>.............<<<<<..............................>>>>>.......<<<<<<<<<<<<.... CGGGGCGTAGCGCAGTCtGGT..A.GCGTACCTGAATGGGGT......TCAGGTG.........................GtCGCTGGTTCAAATCCAGTCGCCCCGACCA tRNA-Pro-GGG-1-1 Sc: 72.5 >>>>>>>..>>>>............<<<<.>>>>>.............<<<<<..............................>>>>>.......<<<<<<<<<<<<.... CGGGACGTGGCTCAGCCtGGT..A.GAGCACTGCATTCGGGA......TGCAGGG.........................GtCGCTGGTTCAAATCCAGTCGTCCCGACCA tRNA-Pro-CGG-1-1 Sc: 79.6 >.>>>.>.....>............<....>.>.>.............<.<.<...>....>>............<<.<....>>>>>.......<<<<<<.<<<.<.... GAGGGGGTCC..CAAC..GGAcgA.GAA.TCAAAACTCGGAAtaagcaTGTAGAGGCCttcGGCTGAAGa...TTTCCGGA.CGCGGGTTCGATTCCCGCCGCCTCCACCA tRNA-Pro-CGG-2-1 Sc: 24.8 >>>>>>>..>>>>............<<<<.>>>>>.............<<<<<..............................>>>>>.......<<<<<<<<<<<<.... CGGGGTGTAGCGCAGCCtGGTt.A.GCGCGCGTGCCTTGGGA......GCACGAG.........................GcCGCCGGTTCGAATCCGGCCACCCCGACCA tRNA-Pro-TGG-1-1 Sc: 84.3
SeC tRNAs
>>>>>>>...>>>>.........<<<<.>>>>>.......<<<<<..>.>.>>........<<.<.<...>>>>>.......<<<<<.<<<<<<<.... GGAGGTGgTAGAGTCCTGGTgG.GCTCCGCGGTCTTCAAAACCGTAAGCAGGGCgCTAGtACCGTTCTgGGTGGGTTCGATTCCCATgCACCTCCGCCA tRNA-SeC-TCA-1-1 Sc: 108.3
Ser tRNAs
>>>>>>>..>>>................<<<......................>>>>>.......<<<<<..>>>>>>>........<<<<<<<...>>>>>.......<<<<<...<<<<<<<.... GGAGAGATGCCCGAGT.GGCcgA....AGGG.....................GCGCGACTGGAAATCGCGT.GAATGCCCACAa...GGTGTTC..CGAGGGTTCGAATCCCTC...TCTCTCCGCCA tRNA-Ser-GGA-1-1 Sc: 84.0 >>>>>>>..>>>................<<<......................>>>>>.......<<<<<..>>>>>>..........<<<<<<...>>>>>.......<<<<<...<<<<<<<.... GGAGAGATGCCCGAGA.GGCcgA....AGGG.....................GGCTGACTCGAAATCAGCTGTACCGCT........TGCGGTAC.CGGGGGTTCAAATCCCTC...TCTCTCCGCCA tRNA-Ser-CGA-1-1 Sc: 78.3 >.>>>.>..>.>>..............<<.<......................>>>>>.......<<<<<...........................>>>>>.......<<<<<...<.<<<.<.... GTGAGGGTATCTCAACa.....A....GACGctgtttttgttatggccttaa.CTGGCCTGTCACGCCGGAG......................GtCGCGAGTTCGAGTCTCGT...CGCTCCCGCCA tRNA-Ser-CGA-2-1 Sc: 39.6 >>>>>>>..>>>................<<<......................>>>>>.......<<<<<..>>>................<<<...>>>>>.......<<<<<...<<<<<<<.... GGAGAGATGGCCGAGT.GGTttA....AGGC.....................GGCGGTCTTGAAAACCGTTGACC....GAAA........GGTC.CGGGGGTTCGAATCCCTC...TCTCTCCGCCA tRNA-Ser-TGA-1-1 Sc: 86.8 >>>>>>>..>>>................<<<......................>>>>>.......<<<<<..>>>>>>>........<<<<<<<...>>>>>.......<<<<<...<<<<<<<.... GGAGAGATGACCGAGA.GGCcgA....AGGT.....................GCTCGCCTGCTAAGCGAGT.GTAGGGTGTAGa...GCCTTAC..CGAGGGTTCGAATCCCTC...TCTCTCCGCCA tRNA-Ser-GCT-1-1 Sc: 85.4
Sup tRNAs
Thr tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.................>>>>>.......<<<<<<<<<<<<.... GCCCACGTAGCTCAGTCGGT.A.GAGCACTTCCTTGGTAAGGAAGAG...........GttCACCGGTTCGATCCCGGTCGTGGGCTCCA tRNA-Thr-GGT-1-1 Sc: 79.4 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.................>>>>>.......<<<<<<<<<<<<.... GCCGGGGTAGCTCAGA.GGCcA.GAGCAGATGATTCGTAATCATCAG...........Gt.CGTGGGTTCGACTCCCATCCCCGGCTCCA tRNA-Thr-CGT-1-1 Sc: 81.9 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.................>.>>>.......<<<.<<<<<<<<.... GCTGGCGTAGCTCAACCGGT.A.GAGCAGCTGATTTGTAATCAGCAG...........Gt.TGCGGGTTCGAGTCCCATCGCCAGCTCCA tRNA-Thr-TGT-1-1 Sc: 76.5
Trp tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGCCAGTAGCTCAACGGCtA.GAGCACCGGTCTCCAAAACCGGGG...........GtTGGGGGTTCGAATCCCTTCTGGCCTGCCA tRNA-Trp-CCA-1-1 Sc: 86.1
Tyr tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GGAGGGGTTCCCGAGCGGCcaA.AGGGGGCAGACTGTAAATCTGTTGGCTCA.....GCCTtCGGAGGTTCGAATCCTCC.CCCCTCCACCA tRNA-Tyr-GTA-1-1 Sc: 78.4
Val tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGCGCGTAGCTCAGGGGGA.GAGCATCACCTTGACGCGGTGAGG...........GtCTGGGGTTCAAATCCCCACGCGCCTACCA tRNA-Val-GAC-1-1 Sc: 71.7 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGGGTAGCTCAGGGGGA.GAGCACTGCCTTCACACGGCAGGG...........GtCGGAGGTTCAAATCCTCTCCCGCCTACCA tRNA-Val-CAC-1-1 Sc: 78.9 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGGGTAGCTCAGCGGGA.GAGCACCGGCCTTACAAGCCGGGG...........GtCACAGGTTCAAATCCTGTTCCGCCTACCA tRNA-Val-TAC-1-1 Sc: 86.6