tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 48
Selenocysteine tRNAs (TCA) 1
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 1
Predicted pseudogenes 11
Total tRNAs 61
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 5494
Number of Codons: 1796330

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
3
TGC
1
5
GCT
1.96
GCC
2.2
GCG
1.85
GCA
2.32
8.33%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
1.54
GGC
2.1
GGG
1.28
GGA
2.55
7.47%
ProAGG
 
GGG
1
CGG
2
TGG
1
4
CCT
1.23
CCC
1.32
CCG
1.64
CCA
0.53
4.72%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
1.08
ACC
1.7
ACG
1.33
ACA
1.04
5.15%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
1.66
GTC
1.9
GTG
2.44
GTA
1.24
7.24%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
2
TGA
1
ACT
 
GCT
1
 
 
 
 
5
TCT
0.9
TCC
1.54
TCG
1.16
TCA
0.82
AGT
0.71
AGC
1.13
 
 
 
 
6.26%
ArgACG
1
GCG
 
CCG
1
TCG
1
 
 
 
 
CCT
2
TCT
1
6
CGT
0.86
CGC
1.05
CGG
1.03
CGA
1.06
 
 
 
 
AGG
0.79
AGA
1.25
6.04%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
6
TAA
1
10
CTT
1.86
CTC
2.59
CTG
2.84
CTA
0.35
 
 
 
 
TTG
1.86
TTA
0.52
10.02%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
1.85
TTC
2.46
 
 
 
 
4.31%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
1.8
AAC
1.58
 
 
 
 
3.38%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
2.39
AAA
2.76
5.15%
AspATC
 
GTC
2
 
 
 
 
2
GAT
3.01
GAC
2.36
 
 
 
 
5.37%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
2.43
GAA
4.15
6.58%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.12
CAC
0.95
 
 
 
 
2.07%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
1.96
CAA
1.26
3.22%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
2.27
ATC
2.73
 
 
ATA
1.43
6.43%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
2.55
 
 
2.55%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
1.3
TAC
1.46
 
 
 
 
2.76%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.14
TAG
0.07
TAA
0.09
0.3%
CysACA
 
GCA
2
 
 
 
 
2
TGT
0.5
TGC
0.81
 
 
 
 
1.31%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.23
 
 
1.23%
SelCys 
 
 
 
 
 
TCA
1
1
 
 
 
 
 
 
 
 
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