Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

Ala tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCTGTAGCTCAGCTGGGAGAGCGTACGGCTGGCAGCCGTAAG...........GtCAGGGGTTCGATCCCCCTCAGCTCCACCA tRNA-Ala-GGC-1-1 Sc: 75.8 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGGATTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTATCCTCCACCA tRNA-Ala-TGC-1-1 Sc: 82.5
Arg tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCCGTAGCTCAGCTGGAtA.GAGTATCTGACTACGAATCAGGGG...........GtCGCAGGTTCGAATCCTGCCGGGCGCGCCA tRNA-Arg-ACG-1-1 Sc: 86.8 >>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCTCGTAGCCCAGG.GGAtA.AGGCGTCAGCCTCCGAAGCTGAAG...........AtCGCTGGTTCGATTCCAGCCGGGCGCACCA tRNA-Arg-CCG-1-1 Sc: 76.6 >>>>>>>..>>>>..........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GCGCCCGTAGCTCAGCTGGAtA.GAGCGCTGGACTTCGAATCCATAG...........GtCGGGGGTTCGAATCCCTCCGGGCGTGCCA tRNA-Arg-TCG-1-1 Sc: 81.6 >>>>>>>..>>>>..........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GCCCCCGTAGCTCAGT.GGAtA.GAGCATAGGATTCCTAATCCTTGA...........G.CGCAGGTTCGATTCCTGCCGGGGGCACCA tRNA-Arg-CCT-1-1 Sc: 82.2 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCTGTAGCTCAGCTGGAtA.GAGCAACGGACTTCTAATCCGTAG...........GtCGCAGGTTCGAATCCTGCCAGGCGTACCA tRNA-Arg-TCT-1-1 Sc: 90.3
Asn tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TCCCCAGTAGCTCAGTTGGCAGAGCAATTGGCTGTTAACCAATGG...........GtCCGCGGTTCAAGTCCGTGCTGGGGAGCCA tRNA-Asn-GTT-1-1 Sc: 78.5
Asp tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGGTGTAGTTCAGTTtGGTtAGAACGCTTGCCTGTCACGCAAGAG...........GtCGCGAGTTCGAGTCTCGTCACTCCCGCCA tRNA-Asp-GTC-1-1 Sc: 84.4 GGGGGTGTAGTTCAGTTtGGTtAGAACGCTTGCCTGTCACGCAAGAG...........GtCGCGAGTTCGAGTCTCGTCACTCCCGCCA tRNA-Asp-GTC-1-2 Sc: 84.4
Cys tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCGGCTTGGCCAAGGGGTA.AGGCAACGGCCTGCAAAGCCGTTA...........TtCTCCGGTTCAAATCCGGAAGCCGCCTCCA tRNA-Cys-GCA-1-1 Sc: 76.2
Gln tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TGGGTGATCGTCCAACGGCA.GGACTACGGACTCTGACTCCGTCA...........A.TTAAGGTTCGAATCCTTATCACCCAGCCA tRNA-Gln-CTG-1-1 Sc: 60.6 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TGGGGCGTCGTCAAGTGGTA.AGACACAGGGTTTTGATCCCTGCA...........TtCAGAGGTTCGAGTCCTCTCGCCCCAGCCA tRNA-Gln-TTG-1-1 Sc: 69.5
Glu tRNAs
>>>>>>>..>>>>.............<<<<......>>>>>.......<<<<<...............>>>>>.......<<<<<...<<<<<<<.... GGTCCCATCGTCTAGC..GGTc.A..GGACG.....CTGGCCTCTCACGCCGGAA...........ACCGGGGTTCGATTCCCCG...TGGGATCACCA tRNA-Glu-CTC-1-1 Sc: 66.1 >..>>>...>>>...............<<<.......>>>>.......<<<<................>>>>>.......<<<<<....<<<..<.... GTAGAT.TAACTCAAA...GTa.A..AAGTAtgttcATGGCCTCTCACGCCGGAA...........ACCGGGGTTCGATTCCCCGtggGATCACCA... tRNA-Glu-CTC-2-1 Sc: 21.0 >>>>>>>..>>>>.............<<<<......>>>>>.......<<<<<...............>>>>>.......<<<<<...<<<<<<<.... GTCCCCATCGTCTAGCCcGGTccA..GGACA.....CCGGCCTTTCACGCCGGCG...........ACAGGGGTTCGAATCCCCT...TGGGGACGCCA tRNA-Glu-TTC-1-1 Sc: 69.7 GTCCCCATCGTCTAGCCcGGTccA..GGACA.....CCGGCCTTTCACGCCGGCG...........ACAGGGGTTCGAATCCCCT...TGGGGACGCCA tRNA-Glu-TTC-1-2 Sc: 69.7
Gly tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGAATAACTCAGT.GGTA.GAGTGCGACCTTGCCAAGGTCGAA...........GtCGCGGGTTCAAATCCCGTTTCCCGCTCCA tRNA-Gly-GCC-1-1 Sc: 84.3 GCGGGAATAACTCAGT.GGTA.GAGTGCGACCTTGCCAAGGTCGAA...........GtCGCGGGTTCAAATCCCGTTTCCCGCTCCA tRNA-Gly-GCC-1-2 Sc: 84.3 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGTATAACTCAGCTGGTA.GAGTGCAAGCTTCCCAAGCTTGAT...........GtCGCGAGTTCGAGTCTCGTTGCCCGCTCCA tRNA-Gly-CCC-1-1 Sc: 81.1 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGAGTAGCTCAGTTGGTA.GAGCTTCAGCCTTCCAAGCTGAAT...........GtCGCGAGTTCGAATCTCGTCTCCCGCTCCA tRNA-Gly-TCC-1-1 Sc: 88.3
His tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTGGGTGTAGCTCAGTTGGTAGAGCACTAGGTTGTGGCCCTGGTG...........GcCGCGGGTTCAAATCCCGTCACTCACCCCA tRNA-His-GTG-1-1 Sc: 74.0
Ile tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCTGTAGCTCAGTT.GGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGGTGGTTCAAATCCACCCAGGCCCACCA tRNA-Ile-GAT-1-1 Sc: 91.1
Leu tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>...........<.<<<...>>>>>.......<<<<<.<<<<<<<.... GCCGAAGTGGTGGAATTGGTaGACACGCACGCTTGAGGGGCGTGTGGGGC...........GaCCCG.TGGGAGTTCAAATCTCCC.CTTCGGCACCA tRNA-Leu-GAG-1-1 Sc: 67.9 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>...........<.<<<...>>>>>.......<<<<<.<<<<<<<.... GCCGAAGTGGCGGAATTGGTaGACGCGCTTGTTTCAGGGACAAGTGAGCGA.........AC.GCTTgTGGGAGTTCGAATCTCCC.CTTCGGCACCA tRNA-Leu-CAG-1-1 Sc: 74.1 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>..............<<<...>>>>>.......<<<<<.<<<<<<<.... GCCGAAGTGGTGGAATTGGTaGACACGCTAGACTTAGGATCTAGT.GCC..GCAA........GGCG.TGGAAGTTCAAGTCTTCT.CTTCGGTACCA tRNA-Leu-TAG-1-1 Sc: 70.4 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>..............<<<...>>>>>.......<<<<<.<<<<<<<.... GCCGGAGTGGTGGAATTGGTaGACGCAGAGGACTCAAAATCCTCCGGGC..GCAA........GCCCtTGCGAGTTCAAGTCTCGC.CTCCGGTACCA tRNA-Leu-CAA-1-1 Sc: 71.9 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>.........<<.<<<...>>>>>.......<<<<<.<<<<<<<.... GCCTGGGTGGCGGAACTGGTaGACGCAAGGGACTTAAAATCCCTC.GGAGATTA......TC.TCTG.TACGAGTTCAATTCTCGT.CCCAGGTACCA tRNA-Leu-TAA-1-1 Sc: 68.5
Lys tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<.... GGGCCGTTAGCTCAACTGGTAGAGCAACTGACTCTTAATCAGTAG...........GtCCCGGGTTCGACTCCCTGACGGCCCACCA tRNA-Lys-CTT-1-1 Sc: 80.1 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCGTTAACTCAGTCGGTAGAGTATCTGCCTTTTAAGCAGAGA...........GtCGCTGGTTCGAGCCCAGCACGGCCCACCA tRNA-Lys-TTT-1-1 Sc: 85.7
Met/Ile2 tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCGACGTAGCTCAGTT.GGTcAGAGCATGCGGCTCATATCCGCAGG...........GtCCGGAGTTCAAATCTCTGCGTCGCTACCA tRNA-Met-CAT-1-1 Sc: 75.3 .>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>..>>.......<<..<<<<<<<..... TGCGGGGTGGAGCAGTCtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCATTGGTTCAAATCCTTTCCCCGCTACCA tRNA-fMet-CAT-1-1 Sc: 60.7 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCTATAGCTCAGTTtGGC.AGAGCCACCGGCTCATAACCGGTCG...........GtCCCTGGTTCGATTCCAGGTGGGCCCACCA tRNA-Ile2-CAT-1-1 Sc: 80.0
Phe tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCAGGTAGCTCAGTCGGTAGAGCAGGGGACTGAAAATCCCCGT...........GtCGGCAGTTCAATTCTGTCCCTGGGCACCA tRNA-Phe-GAA-1-1 Sc: 79.6 GCCCAGGTAGCTCAGTCGGTAGAGCAGGGGACTGAAAATCCCCGT...........GtCGGCAGTTCAATTCTGTCCCTGGGCACCA tRNA-Phe-GAA-1-2 Sc: 79.6
Pro tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGGCGTAGCGCAGTCtGGTAGCGCACTTGTCTGGGGGACAAGTG...........GtCGCTGGTTCAAATCCAGCCGTCCCGACCA tRNA-Pro-GGG-1-1 Sc: 73.9 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGATGTGGCTCAGTCtGGTAGAGCACAGCGTTCGGGACGCTGGG...........GcCGGAGGTTCGAATCCTCTCATCCCGACCA tRNA-Pro-CGG-1-1 Sc: 79.8 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGGCGTAGCGCAGCCtGGTAGCGCGCCTGCTTTGGGAGCAGGAT...........GtCGGAGGTTCAAATCCTCTCGCCCCGACCA tRNA-Pro-TGG-1-1 Sc: 80.1
SeC tRNAs
>>>>>>>....>>>>........<<<<..>>>>>.......<<<<<...>>>>>>.......<<<<<<..>>>>>.......<<<<<...<<<<<<<.... GGAAGTGcgcGGCTCACTGGTG.GGGCccTCGGACTTCAAATCCGATGtGGGGCGCTAGAaCCGTCCCGGGTGGGTTCGATTCCCAT..gCACTTCCGCCA tRNA-SeC-TCA-1-1 Sc: 124.8
Ser tRNAs
..>>>>>.>>.....>>>.................<<<.........>>>>>.......<<<<<..>>>>>...........<<<<<...>>>>>.......<<<<<..<<<<<<<.... ..GGAGA.GGTG...ACCGAGATGGCtg..A...AGGTG........CACGCCTGGAAAGCGTGTGTATCC.TAACc.....GGGTAC.CGAGGGTTCGAATCCCTC..CCTCTCCGCCA tRNA-Ser-GGA-1-1 Sc: 77.9 ..>>>.>.>>.....................................>>>>>.......<<<<<..........................>>>>>.......<<<<<..<<<.<<<.... ..ACGATaTGTG......AAAT...Ta...A...ATAAA........GCGGACTTCTAATCCGTAG.....................GtCGCAGGTTCGAATCCTGC..CAGGCGTACCA tRNA-Ser-CGA-1-1 Sc: 43.0 ..>>>>>.>>.....>>>.................<<<.........>>>>>.......<<<<<..>>>...............<<<...>>>>>.......<<<<<..<<<<<<<.... ..GGAGG.AGTG...GCCGAGC.GGCtg..A...AGGCG........GCGGTCTTGAAAACCGTTAAGTG..TCAA.......AGCTT.CGTGGGTTCGAATCCTAC..CTCCTCCGCCA tRNA-Ser-TGA-1-1 Sc: 79.6 ..>>>>>.>>.....>>>.................<<<.........>>>>>.......<<<<<..>>>>>...........<<<<<...>>>>>.......<<<<<..<<<<<<<.... ..GGAGA.AATG...GCCGAGT.GGCtg..A...AGGCG........CTCGCCTGCTAAGCGAGT.ATGGGTGTTGt...TATCCAT..CCAGAGTTCGAATCTCTG..TTTCTCCGCCA tRNA-Ser-GCT-1-1 Sc: 77.7 ..>>>>...>.....>.>>...............<<.<.........>>>>>.......<<<<<..>>>>>...........<<<<<...>>>>>.......<<<<<..<..<<<<.... aaGGGGT.TATGcgcTATTAACAAGActttA...GAAAAaccgttctTTCGCCTGCTAAGCGAGT.ATGGGTGTTGt...TATCCAT..CCAGAGTTCGAATCTCTG..TTTCTCCGCCA tRNA-Ser-GCT-2-1 Sc: 22.3
Sup tRNAs
Thr tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.................>>>>>.......<<<<<<<<<<<<.... GCCCATGTAGCTCAGTCGGTAGAGCGCTTCCTTGGTAAGGAAGAG...........GttCACCAGTTCGATTCTGGTCATGGGCTCCA tRNA-Thr-GGT-1-1 Sc: 80.2 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.................>>>>>.......<<<<<<<<<<<<.... GCCAATGTAGCTCAGGTGGTAGAGCAGCTCACTCGTAATGAGCAG...........Gc.CTGCGGTTCGAGTCCGCACATTGGCTCCA tRNA-Thr-CGT-1-1 Sc: 79.0 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.................>>>>>.......<<<<<<<<<<<<.... GCCGATATAGCTCAGTTGGTAGAGCATCTCACTTGTAATGAGAAT...........Gt.CCTCCGTTCGATTCGGGGTATCGGCTCCA tRNA-Thr-TGT-1-1 Sc: 74.0
Trp tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGTCAGTAGCTCtAATTGGTAGAGCGCCAGACTCCAAATCTGGAT...........GtTGGGGGTTCGACCCCCTCCTGACCTGCCA tRNA-Trp-CCA-1-1 Sc: 73.4
Tyr tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GGTGGGGTTCCCGAGTGGTcaA.AGGGATCAGACTGTAAATCTGACGGCTCA.....GCCTtCGGAGGTTCAAATCCTCC.CCCCACCACCA tRNA-Tyr-GTA-1-1 Sc: 76.3
Val tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGCGCGTAACTCAGTTGGTAGAGTGCTACCTCGACACGGTAGAA...........GtCAGCAGTTCAAGTCTGCTCGTGCCTACCA tRNA-Val-GAC-1-1 Sc: 65.9 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGATTAACTCAGTTGGGAGAGTGCAACCCTTACAAGGTTGAA...........GtCGCAGGTTCAAGCCCTGCATCGCCCACCA tRNA-Val-TAC-1-1 Sc: 81.6