tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 50
Selenocysteine tRNAs (TCA) 1
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 1
Total tRNAs 52
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 4375
Number of Codons: 1515748

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
 
TGC
1
2
GCT
1.39
GCC
2.5
GCG
0.7
GCA
2.28
6.87%
GlyACC
 
GCC
2
CCC
1
TCC
1
4
GGT
1.65
GGC
1.8
GGG
1.21
GGA
1.99
6.65%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
1.11
CCC
1.09
CCG
1.02
CCA
0.64
3.86%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.86
ACC
2
ACG
0.65
ACA
1.71
5.22%
ValAAC
 
GAC
1
CAC
 
TAC
1
2
GTT
2.36
GTC
1.18
GTG
1.54
GTA
1.06
6.14%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
2
 
 
 
 
5
TCT
1
TCC
1.47
TCG
0.41
TCA
1.47
AGT
0.84
AGC
0.96
 
 
 
 
6.15%
ArgACG
1
GCG
 
CCG
1
TCG
1
 
 
 
 
CCT
1
TCT
1
5
CGT
0.5
CGC
0.44
CGG
0.87
CGA
0.43
 
 
 
 
AGG
0.91
AGA
1.15
4.3%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
2.74
CTC
0.68
CTG
2.58
CTA
0.25
 
 
 
 
TTG
1.76
TTA
1.47
9.48%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
2
 
 
 
 
2
TTT
3.71
TTC
1.08
 
 
 
 
4.79%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
2.93
AAC
1.69
 
 
 
 
4.62%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
1.78
AAA
6.03
7.81%
AspATC
 
GTC
2
 
 
 
 
2
GAT
3.91
GAC
1.8
 
 
 
 
5.71%
Glu 
 
 
 
CTC
2
TTC
2
4
 
 
 
 
GAG
1.52
GAA
4.66
6.18%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.46
CAC
0.59
 
 
 
 
2.05%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
1.91
CAA
1.58
3.49%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
3.96
ATC
2.45
 
 
ATA
1.7
8.11%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
2.71
 
 
2.71%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
2.3
TAC
0.81
 
 
 
 
3.11%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.09
TAG
0.04
TAA
0.16
0.29%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.7
TGC
0.67
 
 
 
 
1.37%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0.98
 
 
0.98%
SelCys 
 
 
 
 
 
TCA
1
1
 
 
 
 
 
 
 
 
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