tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 63
Selenocysteine tRNAs (TCA) 1
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 2
Total tRNAs 66
Intron Summary (tRNAs with introns: 1)
Ser GGA
1

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 3180
Number of Codons: 1111605

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
2
CGC
1
TGC
4
7
GCT
0.41
GCC
7.54
GCG
3.76
GCA
0.81
12.52%
GlyACC
 
GCC
3
CCC
1
TCC
1
5
GGT
0.63
GGC
5.9
GGG
1.91
GGA
0.49
8.93%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.26
CCC
2.87
CCG
2.44
CCA
0.18
5.75%
ThrAGT
 
GGT
2
CGT
1
TGT
1
4
ACT
0.14
ACC
3.57
ACG
1.33
ACA
0.19
5.23%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
0.4
GTC
1.49
GTG
5.61
GTA
0.23
7.73%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
2
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
5
TCT
0.1
TCC
1.71
TCG
1.42
TCA
0.12
AGT
0.13
AGC
1.34
 
 
 
 
4.82%
ArgACG
3
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
6
CGT
0.51
CGC
4.83
CGG
1.61
CGA
0.16
 
 
 
 
AGG
0.33
AGA
0.08
7.52%
LeuAAG
 
GAG
2
CAG
2
TAG
1
 
 
 
 
CAA
1
TAA
1
7
CTT
0.95
CTC
1
CTG
7.9
CTA
0.06
 
 
 
 
TTG
0.57
TTA
0.03
10.51%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
0.66
TTC
2.7
 
 
 
 
3.36%
AsnATT
 
GTT
2
 
 
 
 
2
AAT
0.3
AAC
2.1
 
 
 
 
2.4%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
2.65
AAA
0.29
2.94%
AspATC
 
GTC
2
 
 
 
 
2
GAT
1
GAC
4.75
 
 
 
 
5.75%
Glu 
 
 
 
CTC
 
TTC
3
3
 
 
 
 
GAG
2.48
GAA
3.15
5.63%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.55
CAC
1.75
 
 
 
 
2.3%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
2.62
CAA
0.38
3%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
4
CAT
1
TAT
 
5
ATT
0.52
ATC
3.23
 
 
ATA
0.26
4.01%
fMet/Met 
 
 
 
CAT
2/1
 
 
3
 
 
 
 
ATG
2.65
 
 
2.65%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0.3
TAC
1.81
 
 
 
 
2.11%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.1
TAG
0.15
TAA
0.04
0.29%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.1
TGC
1.18
 
 
 
 
1.28%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.18
 
 
1.18%
SelCys 
 
 
 
 
 
TCA
1
1
 
 
 
 
 
 
 
 
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