tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results (on host zam.soe.ucsc.edu)
Started: Fri Aug  4 10:15:37 PDT 2017

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Search Mode:                       Bacterial
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-bact.cm
                                   TRNAinf-bact-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         1
Seqs w/at least 1 hit:  1
Bases read:             3632260 (x2 for both strands)
Bases in tRNAs:         3976
tRNAs predicted:        50
Av. tRNA length:        79
Script CPU time:        0.45 s
Scan CPU time:          27.04 s
Scan speed:             268.7 Kbp/sec

First pass search(es) ended: Fri Aug  4 10:15:39 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     50
Infernal-confirmed tRNAs:     49
Bases scanned by Infernal:  4976
% seq scanned by Infernal:  0.1 %
Script CPU time:          0.31 s
Infernal CPU time:            30.34 s
Scan speed:               164.0 bp/sec

Infernal analysis of tRNAs ended: Fri Aug  4 10:16:11 PDT 2017

Overall scan speed: 124948.7 bp/sec