tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 48
Selenocysteine tRNAs (TCA) 1
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 49
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 3070
Number of Codons: 1052175

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
0.92
GCC
5.15
GCG
5.36
GCA
0.86
12.29%
GlyACC
 
GCC
2
CCC
1
TCC
1
4
GGT
0.64
GGC
5.56
GGG
1.23
GGA
0.84
8.27%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.4
CCC
1.85
CCG
1.99
CCA
0.11
4.35%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.18
ACC
2.1
ACG
2.63
ACA
0.16
5.07%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
0.61
GTC
2.38
GTG
4.9
GTA
0.34
8.23%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0.2
TCC
1.41
TCG
2.18
TCA
0.14
AGT
0.1
AGC
1.66
 
 
 
 
5.69%
ArgACG
1
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
4
CGT
0.55
CGC
3.97
CGG
0.71
CGA
0.34
 
 
 
 
AGG
0.35
AGA
0.13
6.05%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
0.79
CTC
2.87
CTG
4.57
CTA
0.14
 
 
 
 
TTG
0.94
TTA
0.06
9.37%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
0.33
TTC
3.58
 
 
 
 
3.91%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
0.28
AAC
2.46
 
 
 
 
2.74%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
3.04
AAA
0.63
3.67%
AspATC
 
GTC
2
 
 
 
 
2
GAT
1.44
GAC
4.72
 
 
 
 
6.16%
Glu 
 
 
 
CTC
1
TTC
2
3
 
 
 
 
GAG
4.89
GAA
1.6
6.49%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.59
CAC
1.12
 
 
 
 
1.71%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
2.35
CAA
0.46
2.81%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
0.35
ATC
4.07
 
 
ATA
0.31
4.73%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
2.61
 
 
2.61%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0.4
TAC
2.37
 
 
 
 
2.77%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.09
TAG
0.13
TAA
0.08
0.3%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.1
TGC
1.49
 
 
 
 
1.59%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.13
 
 
1.13%
SelCys 
 
 
 
 
 
TCA
1
1
 
 
 
 
 
 
 
 
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