tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 37
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 37
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 989
Number of Codons: 302542

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
 
CGC
 
TGC
1
1
GCT
2.3
GCC
0.23
GCG
0.28
GCA
2.63
5.44%
GlyACC
 
GCC
1
CCC
 
TCC
1
2
GGT
2.34
GGC
0.38
GGG
0.69
GGA
2.14
5.55%
ProAGG
 
GGG
1
CGG
 
TGG
1
2
CCT
1.43
CCC
0.12
CCG
0.15
CCA
1.33
3.03%
ThrAGT
 
GGT
1
CGT
 
TGT
1
2
ACT
2.09
ACC
0.33
ACG
0.24
ACA
2.19
4.85%
ValAAC
 
GAC
1
CAC
 
TAC
1
2
GTT
2.66
GTC
0.37
GTG
0.85
GTA
3
6.88%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
 
TGA
1
ACT
 
GCT
1
 
 
 
 
3
TCT
2.6
TCC
0.35
TCG
0.23
TCA
1.91
AGT
2.34
AGC
0.56
 
 
 
 
7.99%
ArgACG
1
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
4
CGT
0.75
CGC
0.14
CGG
0.08
CGA
0.21
 
 
 
 
AGG
0.68
AGA
1.67
3.53%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
1.33
CTC
0.22
CTG
0.35
CTA
1.2
 
 
 
 
TTG
1.56
TTA
4.8
9.46%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
3.74
TTC
0.71
 
 
 
 
4.45%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
5.09
AAC
1.39
 
 
 
 
6.48%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
1.88
AAA
5.32
7.2%
AspATC
 
GTC
1
 
 
 
 
1
GAT
4.69
GAC
0.79
 
 
 
 
5.48%
Glu 
 
 
 
CTC
 
TTC
1
1
 
 
 
 
GAG
1.21
GAA
4.32
5.53%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.74
CAC
0.45
 
 
 
 
2.19%
Gln 
 
 
 
CTG
 
TTG
1
1
 
 
 
 
CAG
0.83
CAA
2.51
3.34%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
4.11
ATC
0.82
 
 
ATA
4.74
9.67%
fMet/Met 
 
 
 
CAT
1/2
 
 
3
 
 
 
 
ATG
2.38
 
 
2.38%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
3.1
TAC
0.74
 
 
 
 
3.84%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.05
TAG
0.08
TAA
0.2
0.33%
CysACA
 
GCA
1
 
 
 
 
1
TGT
1.3
TGC
0.27
 
 
 
 
1.57%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0.65
 
 
0.65%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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