Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

Ala tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCA... tRNA-Ala-TGC-1-1 Sc: 74.9 GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCA... tRNA-Ala-TGC-1-2 Sc: 74.9 GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCA... tRNA-Ala-TGC-1-3 Sc: 74.9
Arg tRNAs
>>>>>>>..>>>>............<<<<.>>>>>.........<<<<<...................>>>>>.......<<<<<.<<<<<<<.... GCACCCATAGCTCAACTGGAtA...GAGTGTTTGACTACGAA..TCAAAAG..............GtTAGGGGTTCGACTCCCTT.TGGGTGCA... tRNA-Arg-ACG-1-1 Sc: 71.2 GCACCCATAGCTCAACTGGAtA...GAGTGTTTGACTACGAA..TCAAAAG..............GtTAGGGGTTCGACTCCCTT.TGGGTGCA... tRNA-Arg-ACG-1-2 Sc: 71.2 >>>>>>>..>>>..............<<<..>>.............<<....................>>>>>.......<<<<<.<<<<<<<.... TGGCGTGTAGCAT..CTGGG.A....TGCAACGAGC..ATAT..AGCGAG.ATAA..........GaGGCAGGTTCGATTCCTGT.CACGCCAA... tRNA-Arg-GCG-1-1 Sc: 26.3 >>>>>>>..>>>..............<<<.>>>>>.........<<<<<...................>>>>>.......<<<<<.<<<<<<<.... GCGCCCTTAGTGTAGT.GGAtA...TCACGTAAGATTCCGGT..TCTTGAG..............A.CGGGGGTTCGATTCCCTC.AGGGCGCG... tRNA-Arg-CCG-1-1 Sc: 57.4 >>>>>>>..>>>>............<<<<.>>>>>.........<<<<<...................>>>>>.......<<<<<.<<<<<<<.... GTTCTCGTAGCTCAGTAGGAtA...GAGCAACCGCCTCCTAA..GCGGTAG..............GtCGCTGGTTCAATTCCAGT.CGGGAACG... tRNA-Arg-CCT-1-1 Sc: 65.3 >>>>>>>..>>>>............<<<<.>>>>>.........<<<<<...................>>>>>.......<<<<<.<<<<<<<.... GTCATAGTAGCTCAGCAGGAtA...GAGCATCCGCCTTCTAA..GCGGACG..............GtCGGGGGTTCGAATCCCTC.CTGTGACG... tRNA-Arg-TCT-1-1 Sc: 69.4 >>>>>>>..>>>>............<<<<.>.>>>.........<<<.<...................>>>>>.......<<<<<.<<<<<<<.... TGGAATATAGCTCAGCAGGAtA...GAGCATCCGCTTTCTAA..GCGTACG..............GtCATGAGTTCGAGTCTCAT.TATTCCAG... tRNA-Arg-TCT-2-1 Sc: 56.6
Asn tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TCCGGCATAGCTCAGTTGGTaGTAGCGCATGACTGTTAATCATGAT...........GtCGTAGGTTCGAGTCCTACTGCCGGAG... tRNA-Asn-GTT-1-1 Sc: 70.4 TCCGGCATAGCTCAGTTGGTaGTAGCGCATGACTGTTAATCATGAT...........GtCGTAGGTTCGAGTCCTACTGCCGGAG... tRNA-Asn-GTT-1-2 Sc: 70.4
Asp tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGTTTGGTAGTTCAGCTGGTtA.GAATGCCTGCCTGTCACGCAGGAG...........GtCGCGGGTTCGAGTCCCGTCCAGACCGCCA tRNA-Asp-GTC-1-1 Sc: 81.9 GGTTTGGTAGTTCAGCTGGTtA.GAATGCCTGCCTGTCACGCAGGAG...........GtCGCGGGTTCGAGTCCCGTCCAGACCG... tRNA-Asp-GTC-2-1 Sc: 75.0 GGTTCCGTGGTGTAGG.GGTtA.ACATGCCTGCCTGTCACGCAGGAG...........AtCGCGGGTTCAAATCCCGTCGGAACCGCCA tRNA-Asp-GTC-3-1 Sc: 74.5
Cys tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<.<<<<<<<.... GGCGGTATAGCCAAGTGGTA.AGGCAGAGGTCTGCAAAACCTTC...........AtCACCGGTTCAAATCCGGT.TACCGCCT... tRNA-Cys-GCA-1-1 Sc: 70.6
Gln tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TGGGGTATAGCCAAGCGGTA.AGGCAACGGACTTTGACTCCGTCA...........TgCGTTGGTTCGAATCCAGCTACCCCAG... tRNA-Gln-TTG-1-1 Sc: 68.2 TGGGGTATAGCCAAGCGGTA.AGGCAACGGACTTTGACTCCGTCA...........TgCGTTGGTTCGAATCCAGCTACCCCAG... tRNA-Gln-TTG-1-2 Sc: 68.2
Glu tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGCCCGTTGGTCAAGCGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAGTCCCGTACGGGTCA... tRNA-Glu-TTC-1-1 Sc: 71.4 GGCCCGTTGGTCAAGCGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAGTCCCGTACGGGTCA... tRNA-Glu-TTC-1-2 Sc: 71.4 GGCCCGTTGGTCAAGCGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAGTCCCGTACGGGTCA... tRNA-Glu-TTC-1-3 Sc: 71.4
Gly tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCGGAAATAGCTCAGTGGTA.GAGCACCACCTTGCCAAGGTGGGG...........GtCGCGGGTTCGAACCCCGT.TTTCCGCT... tRNA-Gly-GCC-1-1 Sc: 82.3 GCGGAAATAGCTCAGTGGTA.GAGCACCACCTTGCCAAGGTGGGG...........GtCGCGGGTTCGAACCCCGT.TTTCCGCT... tRNA-Gly-GCC-1-2 Sc: 82.3 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCGGGTGTAGTTTAGTGGTA.AAACCACAGCCTTCCAAGCTGTT............GtCGCGAGTTCGATTCTCGT.CACCCGCT... tRNA-Gly-TCC-1-1 Sc: 75.4 GCGGGTGTAGTTTAGTGGTA.AAACCACAGCCTTCCAAGCTGTT............GtCGCGAGTTCGATTCTCGT.CACCCGCT... tRNA-Gly-TCC-1-2 Sc: 75.4
His tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGATCGTGGTGAAGTGGTtA.ACACACCAGATTGTGGCTCTGGCA...........TtCGTGGGTTCGATTCCCATCGGTCGCC... tRNA-His-GTG-1-1 Sc: 62.9
Ile tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGATGGTTCGAGTCCATTTAGGCCCA... tRNA-Ile-GAT-1-1 Sc: 81.2 GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGATGGTTCGAGTCCATTTAGGCCCA... tRNA-Ile-GAT-1-2 Sc: 81.2
Leu tRNAs
>>>>>>>...>>>............................<<<.>>>....>>..................................<<..<<<..>>>>>............<<<<<...>>>>>.......<<<<<..<<<<<<<.... GCAGATG.TGTTGGAAT.............TGGCaG....ACAAGCAT....GATTGAGGG...........................TC..ATGT.GGACAG..........ATGTCCG.TGTGGGTTCGAGTCCCAT..CATCTGCA... tRNA-Leu-GAG-1-1 Sc: 61.0 >>>>>>>...>>>............................<<<.>>>....>>..................................<<..<<<..>>>................<<<...>>>>>.......<<<<<..<<<<<<<.... GCGGGTG.TGGCGGAAT.............TGGCaG....ACGCACTA....GATTTAGGA...........................TC..TAGC.GCC....GCAA........GGCG.TGGGGGTTCAAGTCCCTT..CACCCGCA... tRNA-Leu-TAG-1-1 Sc: 69.0 GCGGGTG.TGGCGGAAT.............TGGCaG....ACGCACTA....GATTTAGGA...........................TC..TAGC.GCC....GCAA........GGCG.TGGGGGTTCAAGTCCCTT..CACCCGCA... tRNA-Leu-TAG-1-2 Sc: 69.0 >>>>>>>...>>>............................<<<.>>>....>>..................................<<..<<<..>>>>..............<<<<...>>>>>.......<<<<<..<<<<<<<.... GCCGGCG.TGGCGGAAT.............TGGCaG....ACGCGCTG....GACTCAAAA...........................TC..CAGT.TCCT...TCAC.......GGGAG.TGCCGGTTCGACCCCGGC..CGCCGGTA... tRNA-Leu-CAA-1-1 Sc: 63.5 >>>>>>>...>>>............................<<<.>>>....>>..................................<<..<<<..>>>>>............<<<<<...>>>>>.......<<<<<..<<<<<<<.... GCCGGGG.TGGCGGAAC.............TGGCaG....ACGCACAG....GACTTAAAA...........................TC..CTGC.GGTGA..GTGA......TCACCG.TACCGGTTCGATTCCGGT..CCTCGGCA... tRNA-Leu-TAA-1-1 Sc: 68.7 GCCGGGG.TGGCGGAAC.............TGGCaG....ACGCACAG....GACTTAAAA...........................TC..CTGC.GGTGA..GTGA......TCACCG.TACCGGTTCGATTCCGGT..CCTCGGCA... tRNA-Leu-TAA-1-2 Sc: 68.7 .>>.......>>>............................<<<.>>>....>>..................................<<..<<<..>.>>..............<<.<...>>>>>.......<<<<<......<<..... AGCTTACc.AGACTAGCaatacagaatgcc..........TGTCACTCggcaCGCTGTAAAgcgaacctttaaatgagtgtctatgaaCGtaGAGATTTAAGTGGCAAt...ATGTTTGGaCGCGGGTTCGACTCCCGC.....CGTCTCCA tRNA-Leu-TAA-2-1 Sc: 22.5
Lys tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<.... GGGCTGTTAGCTCAGTTGGTAGAGCAGATGACTCTTAATCATCGG...........GtCGCGGGTTCGAGCCCCTCACAGCCCA... tRNA-Lys-CTT-1-1 Sc: 70.3 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GAGCCGTTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGG...........GtCACAGGTTCGAGCCCTGTACGGCTCA... tRNA-Lys-TTT-1-1 Sc: 81.7 GAGCCGTTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGG...........GtCACAGGTTCGAGCCCTGTACGGCTCA... tRNA-Lys-TTT-1-2 Sc: 81.7
Met/Ile2 tRNAs
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGGTGGAGCAGTCaGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTGCCCCCGCAA... tRNA-fMet-CAT-1-1 Sc: 72.6 CGCGGGGTGGAGCAGTCaGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTGCCCCCGCAA... tRNA-fMet-CAT-1-2 Sc: 72.6 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGCGGTGTAGCTCAGCT.GGCtAGAGCGTCCGGTTCATACCCGGGAG...........GtCGGGGGTTCGATCCCCTCCGCCGCGA... tRNA-Met-CAT-1-1 Sc: 69.1 GGACCTTTAGCTCAGTT.GGTtAGAGCAGACGGCTCATAACCGTCCG...........GtCGTAGGTTCGAGTCCTACAAGGTCCA... tRNA-Ile2-CAT-1-1 Sc: 80.4 GGACCATTAGCTCAGTT.GGTtAGAGCAAACGGCTCATAACCGTTCG...........GtCACAGGTTCGAGCCCTGTATGGTCCA... tRNA-Ile2-CAT-2-1 Sc: 77.6 .>>>>>>..>>>>..........<<<<.>>.>>.......<<.<<................>>>>>.......<<<<<<<<<<<..... GGACCATTAGCTCAGCT.GGTtAGAGCAAACGGCTCATGACTATTCG...........GtCGATGGTTCGAATTCATCATGGTCGA... tRNA-Ile2-CAT-3-1 Sc: 43.7
Phe tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCGTGGTAGCTCAGTTGGTAGAGCAACGGATTGAAGCTCCGTGT...........GtCGGCAGTTCGACTCTGTCTCACGCCA... tRNA-Phe-GAA-1-1 Sc: 71.1 >>>.>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<.<<<.... GGCTCGGTAGCTCAGTTGGTAGAGCAATGGATTGAAGCTCCATGT...........GtCGGCAGTTCGATTCTGTCCCGCGCCA... tRNA-Phe-GAA-2-1 Sc: 68.3
Pro tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGAAGTAGCTCAGCTtGGTAGAGCACTTGGTTTGGGACCAAGGG...........GtCGCAGGTTCGAATCCTGTCTTCCCGA... tRNA-Pro-TGG-1-1 Sc: 79.9 CGGGAAGTAGCTCAGCTtGGTAGAGCACTTGGTTTGGGACCAAGGG...........GtCGCAGGTTCGAATCCTGTCTTCCCGA... tRNA-Pro-TGG-1-2 Sc: 79.9
SeC tRNAs
Ser tRNAs
>>>>>>>..>>>..............<<<.>>>>>.......<<<<<..>>>>>>>....<<<<<<<.>>>>>.......<<<<<..<<<<<<<.... GGAGAGTTGTCCGAGA..GGCcgA.AGGAGCATGATTGGAAATCATGT.AGGCGGTAAACACTGTCTCAAGGGTTCGAATCCCTT..ACTCTCCG... tRNA-Ser-GGA-1-1 Sc: 70.2 >>>>>>>..>>>..............<<<.>>>>>.......<<<<<...>>>>........<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAGGATTACCCAAGTTtGGCtgA.AGGGGACGGTCTCGAAAACCGTTAGGCGAG.TAAC.ATCGTGCAAGGGTTCGAATCCCTT..ATCCTCCG... tRNA-Ser-CGA-1-1 Sc: 69.2 >>>>>>>..>>>..............<<<.>>>>>.......<<<<<...>>>>........<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAGGATTACCCAAGTCcGGCtgA.AGGGAACGGTCTTGAAAACCGTCAGGCGGG.TAAA.ACCGTGCAAGGGTTCGAATCCCTT..ATCCTCCT... tRNA-Ser-TGA-1-1 Sc: 69.3 GGAGGATTACCCAAGTCcGGCtgA.AGGGAACGGTCTTGAAAACCGTCAGGCGGG.TAAA.ACCGTGCAAGGGTTCGAATCCCTT..ATCCTCCT... tRNA-Ser-TGA-1-2 Sc: 69.3 >>>>>>>..>>>..............<<<.>>>>>.......<<<<<...>>>>>......<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGGGAAGTACTCAAGT..GGCtgA.AGAGGCGCCCCTGCTAAGGGTGTAGGTCGG.GAAA.CCGGCGCGAGGGTTCAAATCCCTC..CTTCTCCG... tRNA-Ser-GCT-1-1 Sc: 71.8
Sup tRNAs
Thr tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGCCTTAGCTCAGTTGGTAGAGCACCACCATGGTAAGGTGGGG...........GtCGCCGGTTCAAGCCCGGCAGGTGGCT... tRNA-Thr-GGT-1-1 Sc: 71.8 >>>>>>>..>>>>........<<<<.>>>>.........<<<<.................>>>>.......<<<<.<<<<<<<.... GCCAGCTTAGCTCAGTTGGTAGAGCAACGCACTCGTAACGCGTAG...........GtCACAGGTTCGATCCCTGCAGCTGGCA... tRNA-Thr-CGT-1-1 Sc: 67.6 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGGCTTAGCTCAGTTGGTAGAGCATCTGATTTGTAATCAGAGG...........GtCGAGGGTTCAAGTCCTTTAGCCGGCACCA tRNA-Thr-TGT-1-1 Sc: 88.3 GCCGGCTTAGCTCAGTTGGTAGAGCATCTGATTTGTAATCAGAGG...........GtCGAGGGTTCAAGTCCTTTAGCCGGCACCA tRNA-Thr-TGT-1-2 Sc: 88.3
Trp tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... AGGGGCATAGTTTAAA.GGTA.GAACAACGGTCTCCAAAACCGTTG...........GTGTGGGTTCAATTCCTGCTGCCCCTGCCA tRNA-Trp-CCA-1-1 Sc: 72.2 TGGAGCATAGCTTAATCGGTA.GAGCAGCGGTCTCCAAAACCGTTA...........GTATAGGTTCGAGTCCTATTGTTCCAG... tRNA-Trp-CCA-2-1 Sc: 64.5
Tyr tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>.......<<<<...>>>>>.......<<<<<.<<<<<<<.... GGAGGAATAGCGAAGTGGCtaA.ACGCGACGGACTGTAAATCCGTTCCTT.......AGGGTtCAGTGGTTCGAATCCACT.TTCCTCCA... tRNA-Tyr-GTA-1-1 Sc: 70.3 GGAGGAATAGCGAAGTGGCtaA.ACGCGACGGACTGTAAATCCGTTCCTT.......AGGGTtCAGTGGTTCGAATCCACT.TTCCTCCA... tRNA-Tyr-GTA-1-2 Sc: 70.3
Val tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGAGGTTTAGCTCAGCTGGGAGAGCACCTGCCTTACAAGCAGGGG...........GtCAGCGGTTCGATCCCGTTAACCTCCA... tRNA-Val-TAC-1-1 Sc: 78.4 GGAGGTTTAGCTCAGCTGGGAGAGCACCTGCCTTACAAGCAGGGG...........GtCAGCGGTTCGATCCCGTTAACCTCCA... tRNA-Val-TAC-1-2 Sc: 78.4 GGAGGTTTAGCTCAGCTGGGAGAGCACCTGCCTTACAAGCAGGGG...........GtCAGCGGTTCGATCCCGTTAACCTCCA... tRNA-Val-TAC-1-3 Sc: 78.4