tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 63
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 2
Total tRNAs 65
Intron Summary (tRNAs with introns: 1)
Leu TAA
1

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 2965
Number of Codons: 888577

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
 
CGC
 
TGC
3
3
GCT
2.23
GCC
1.29
GCG
1.45
GCA
2.49
7.46%
GlyACC
 
GCC
2
CCC
 
TCC
2
4
GGT
2.16
GGC
1.75
GGG
0.98
GGA
1.63
6.52%
ProAGG
 
GGG
 
CGG
 
TGG
2
2
CCT
1.1
CCC
0.29
CCG
0.53
CCA
1.66
3.58%
ThrAGT
 
GGT
1
CGT
1
TGT
2
4
ACT
1.38
ACC
0.98
ACG
1.38
ACA
2.51
6.25%
ValAAC
 
GAC
 
CAC
 
TAC
3
3
GTT
2.62
GTC
1.37
GTG
1.49
GTA
1.46
6.94%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
2
ACT
 
GCT
1
 
 
 
 
5
TCT
1.3
TCC
0.41
TCG
0.45
TCA
1.35
AGT
1.49
AGC
0.66
 
 
 
 
5.66%
ArgACG
2
GCG
1
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
2
7
CGT
1.37
CGC
0.6
CGG
0.4
CGA
0.7
 
 
 
 
AGG
0.09
AGA
0.55
3.71%
LeuAAG
 
GAG
1
CAG
 
TAG
2
 
 
 
 
CAA
1
TAA
3
7
CTT
1.05
CTC
0.31
CTG
0.52
CTA
0.92
 
 
 
 
TTG
1.95
TTA
5.07
9.82%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
2
 
 
 
 
2
TTT
3.47
TTC
1.06
 
 
 
 
4.53%
AsnATT
 
GTT
2
 
 
 
 
2
AAT
3.24
AAC
1.36
 
 
 
 
4.6%
Lys 
 
 
 
CTT
1
TTT
2
3
 
 
 
 
AAG
1.09
AAA
5.8
6.89%
AspATC
 
GTC
3
 
 
 
 
3
GAT
3.63
GAC
1.23
 
 
 
 
4.86%
Glu 
 
 
 
CTC
 
TTC
3
3
 
 
 
 
GAG
1.21
GAA
6.28
7.49%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.28
CAC
0.45
 
 
 
 
1.73%
Gln 
 
 
 
CTG
 
TTG
2
2
 
 
 
 
CAG
0.76
CAA
3.86
4.62%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
2
CAT
3
TAT
 
5
ATT
5.16
ATC
1.47
 
 
ATA
0.57
7.2%
fMet/Met 
 
 
 
CAT
2/1
 
 
3
 
 
 
 
ATG
2.55
 
 
2.55%
TyrATA
 
GTA
2
 
 
 
 
2
TAT
2.7
TAC
0.91
 
 
 
 
3.61%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.04
TAG
0.06
TAA
0.24
0.34%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.4
TGC
0.15
 
 
 
 
0.55%
Trp 
 
 
 
CCA
2
 
 
2
 
 
 
 
TGG
0.93
 
 
0.93%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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