tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 83
Selenocysteine tRNAs (TCA) 1
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 1
Predicted pseudogenes 0
Total tRNAs 85
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 4808
Number of Codons: 1508238

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
2
CGC
 
TGC
1
3
GCT
1.58
GCC
2.53
GCG
3.24
GCA
2.09
9.44%
GlyACC
 
GCC
3
CCC
1
TCC
1
5
GGT
2.49
GGC
2.86
GGG
1.14
GGA
0.88
7.37%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.73
CCC
0.56
CCG
2.23
CCA
0.85
4.37%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.92
ACC
2.29
ACG
1.46
ACA
0.79
5.46%
ValAAC
 
GAC
2
CAC
 
TAC
5
7
GTT
1.85
GTC
1.5
GTG
2.56
GTA
1.1
7.01%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
2
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
5
TCT
0.8
TCC
0.88
TCG
0.87
TCA
0.76
AGT
0.93
AGC
1.58
 
 
 
 
5.82%
ArgACG
5
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
2
9
CGT
2.07
CGC
2.1
CGG
0.57
CGA
0.37
 
 
 
 
AGG
0.15
AGA
0.24
5.5%
LeuAAG
 
GAG
1
CAG
4
TAG
1
 
 
 
 
CAA
1
TAA
1
8
CTT
1.16
CTC
1.09
CTG
5.19
CTA
0.4
 
 
 
 
TTG
1.36
TTA
1.39
10.59%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
2
 
 
 
 
2
TTT
2.24
TTC
1.6
 
 
 
 
3.84%
AsnATT
 
GTT
4
 
 
 
 
4
AAT
1.84
AAC
2.14
 
 
 
 
3.98%
Lys 
 
 
 
CTT
 
TTT
6
6
 
 
 
 
AAG
1.05
AAA
3.36
4.41%
AspATC
 
GTC
3
 
 
 
 
3
GAT
3.26
GAC
1.89
 
 
 
 
5.15%
Glu 
 
 
 
CTC
 
TTC
6
6
 
 
 
 
GAG
1.8
GAA
3.92
5.72%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.31
CAC
0.94
 
 
 
 
2.25%
Gln 
 
 
 
CTG
2
TTG
2
4
 
 
 
 
CAG
2.91
CAA
1.53
4.44%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
2
TAT
 
3
ATT
3.03
ATC
2.44
 
 
ATA
0.5
5.97%
fMet/Met 
 
 
 
CAT
4/2
 
 
6
 
 
 
 
ATG
2.73
 
 
2.73%
TyrATA
 
GTA
3
 
 
 
 
3
TAT
1.6
TAC
1.2
 
 
 
 
2.8%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.1
TAG
0.02
TAA
0.2
0.32%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.5
TGC
0.63
 
 
 
 
1.13%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.53
 
 
1.53%
SelCys 
 
 
 
 
 
TCA
1
1
 
 
 
 
 
 
 
 
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