tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0 (Sept 2015) scan results (on host hoag.soe.ucsc.edu)
Started: Fri Sep 25 07:59:00 PDT 2015

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Search Mode:                 Bacterial
Searching with:              Infernal only
Perform isotype specific model scan
Covariance model:            infernal-1.1/TRNAinf-bact.cm
Isotype specific

Reporting HMM/2' structure score breakdown
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Infernal Stats:
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Sequences read:           1
Infernal-confirmed tRNAs:     87
Bases scanned by Infernal:  9283304
% seq scanned by Infernal:  100.0 %
Script CPU time:          5.36 s
Infernal CPU time:            1332.74 s
Scan speed:               6965.6 bp/sec

Infernal analysis of tRNAs ended: Fri Sep 25 08:02:09 PDT 2015

Overall scan speed: 6937.7 bp/sec

tRNAs decoding Standard 20 AA:              85
Selenocysteine tRNAs (TCA):                 1
Possible suppressor tRNAs (CTA,TTA):        0
tRNAs with undetermined/unknown isotypes:   0
Predicted pseudogenes:                      1
                                            -------
Total tRNAs:                                87

tRNAs with introns:     	0

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Isotype / Anticodon Counts:

Ala   : 5	  AGC:         GGC: 2       CGC:         TGC: 3     
Gly   : 6	  ACC:         GCC: 4       CCC: 1       TCC: 1     
Pro   : 3	  AGG:         GGG: 1       CGG: 1       TGG: 1     
Thr   : 4	  AGT:         GGT: 2       CGT: 1       TGT: 1     
Val   : 7	  AAC:         GAC: 2       CAC:         TAC: 5     
Ser   : 5	  AGA:         GGA: 2       CGA: 1       TGA: 1       ACT:         GCT: 1     
Arg   : 7	  ACG: 4       GCG:         CCG: 1       TCG:         CCT: 1       TCT: 1     
Leu   : 8	  AAG:         GAG: 1       CAG: 4       TAG: 1       CAA: 1       TAA: 1     
Phe   : 2	  AAA:         GAA: 2                               
Asn   : 4	  ATT:         GTT: 4                               
Lys   : 6	                            CTT:         TTT: 6     
Asp   : 3	  ATC:         GTC: 3                               
Glu   : 4	                            CTC:         TTC: 4     
His   : 1	  ATG:         GTG: 1                               
Gln   : 4	                            CTG: 2       TTG: 2     
Ile   : 3	  AAT:         GAT: 3                    TAT:       
Met   : 8	                            CAT: 8                  
Tyr   : 3	  ATA:         GTA: 3                               
Supres: 0	                            CTA:         TTA:       
Cys   : 1	  ACA:         GCA: 1                               
Trp   : 1	                            CCA: 1                  
SelCys: 1	                                         TCA: 1