tRNA Gene Summary

Overview
tRNAs Decoding Standard 20 AA 85
Selenocysteine tRNAs (TCA) 1
Possible suppressor tRNAs (CTA,TTA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 1
Total tRNAs 87
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in RefSeq.
Number of CDS: 4319
Number of Codons: 1361875

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
2
CGC
 
TGC
3
5
GCT
1.52
GCC
2.55
GCG
3.37
GCA
2.02
9.46%
GlyACC
 
GCC
4
CCC
1
TCC
1
6
GGT
2.47
GGC
2.96
GGG
1.11
GGA
0.79
7.33%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.7
CCC
0.55
CCG
2.33
CCA
0.85
4.43%
ThrAGT
 
GGT
2
CGT
1
TGT
1
4
ACT
0.89
ACC
2.34
ACG
1.44
ACA
0.71
5.38%
ValAAC
 
GAC
2
CAC
 
TAC
5
7
GTT
1.83
GTC
1.53
GTG
2.62
GTA
1.09
7.07%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
2
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
5
TCT
0.8
TCC
0.86
TCG
0.89
TCA
0.72
AGT
0.87
AGC
1.6
 
 
 
 
5.74%
ArgACG
4
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
7
CGT
2.09
CGC
2.2
CGG
0.54
CGA
0.36
 
 
 
 
AGG
0.12
AGA
0.21
5.52%
LeuAAG
 
GAG
1
CAG
4
TAG
1
 
 
 
 
CAA
1
TAA
1
8
CTT
1.1
CTC
1.11
CTG
5.28
CTA
0.39
 
 
 
 
TTG
1.37
TTA
1.39
10.64%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
2
 
 
 
 
2
TTT
2.22
TTC
1.65
 
 
 
 
3.87%
AsnATT
 
GTT
4
 
 
 
 
4
AAT
1.77
AAC
2.15
 
 
 
 
3.92%
Lys 
 
 
 
CTT
 
TTT
6
6
 
 
 
 
AAG
1.03
AAA
3.37
4.4%
AspATC
 
GTC
3
 
 
 
 
3
GAT
3.21
GAC
1.91
 
 
 
 
5.12%
Glu 
 
 
 
CTC
 
TTC
4
4
 
 
 
 
GAG
1.78
GAA
3.95
5.73%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.29
CAC
0.97
 
 
 
 
2.26%
Gln 
 
 
 
CTG
2
TTG
2
4
 
 
 
 
CAG
2.89
CAA
1.54
4.43%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
3
 
 
TAT
 
3
ATT
3.04
ATC
2.52
 
 
ATA
0.44
6%
Met 
 
 
 
CAT
8
 
 
8
 
 
 
 
ATG
2.78
 
 
2.78%
TyrATA
 
GTA
3
 
 
 
 
3
TAT
1.6
TAC
1.22
 
 
 
 
2.82%
Supres 
 
 
 
CTA
 
TTA
 
0
Stop 
 
 
 
TAG
0.03
TAA
0.21
0.24%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.5
TGC
0.65
 
 
 
 
1.15%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.53
 
 
1.53%
SelCys 
 
 
 
 
 
TCA
1
1
Stop 
 
 
 
 
 
TGA
0.11
0.11%