tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 47
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 47
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 2765
Number of Codons: 859453

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
 
CGC
 
TGC
3
3
GCT
2.12
GCC
0.66
GCG
0.69
GCA
3.73
7.2%
GlyACC
 
GCC
2
CCC
 
TCC
2
4
GGT
2.19
GGC
1.11
GGG
0.46
GGA
3.01
6.77%
ProAGG
 
GGG
 
CGG
1
TGG
1
2
CCT
1.07
CCC
0.07
CCG
0.63
CCA
1.05
2.82%
ThrAGT
 
GGT
1
CGT
1
TGT
2
4
ACT
1.46
ACC
0.39
ACG
0.42
ACA
3.15
5.42%
ValAAC
 
GAC
 
CAC
 
TAC
2
2
GTT
3.17
GTC
0.52
GTG
1.09
GTA
2.4
7.18%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
 
CGA
 
TGA
1
ACT
 
GCT
1
 
 
 
 
2
TCT
1.2
TCC
0.28
TCG
0.35
TCA
2.01
AGT
1.22
AGC
0.93
 
 
 
 
5.99%
ArgACG
1
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
 
TCT
1
3
CGT
0.48
CGC
0.18
CGG
0.11
CGA
0.16
 
 
 
 
AGG
0.6
AGA
2.35
3.88%
LeuAAG
1
GAG
 
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
2
6
CTT
3.93
CTC
0.37
CTG
1.09
CTA
0.22
 
 
 
 
TTG
0.68
TTA
1.76
8.05%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
2.74
TTC
1.27
 
 
 
 
4.01%
AsnATT
 
GTT
2
 
 
 
 
2
AAT
3.98
AAC
1.33
 
 
 
 
5.31%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
4.25
AAA
3.14
7.39%
AspATC
 
GTC
2
 
 
 
 
2
GAT
4.76
GAC
1.49
 
 
 
 
6.25%
Glu 
 
 
 
CTC
1
TTC
2
3
 
 
 
 
GAG
2.86
GAA
4.09
6.95%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.21
CAC
0.35
 
 
 
 
1.56%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
2.38
CAA
0.33
2.71%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
2
CAT
1
TAT
 
3
ATT
3.89
ATC
1.23
 
 
ATA
3.11
8.23%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
3.18
 
 
3.18%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
3.4
TAC
0.98
 
 
 
 
4.38%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.05
TAG
0.06
TAA
0.21
0.32%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.9
TGC
0.52
 
 
 
 
1.42%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0.77
 
 
0.77%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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