tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 47
Selenocysteine tRNAs (TCA) 1
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 1
Total tRNAs 49
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 3324
Number of Codons: 1121679

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
2
4
GCT
0.86
GCC
5.77
GCG
2.44
GCA
1.19
10.26%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
1.03
GGC
4.02
GGG
2.19
GGA
1.2
8.44%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.42
CCC
2.14
CCG
1.89
CCA
0.22
4.67%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.42
ACC
3.4
ACG
1.38
ACA
0.38
5.58%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
1.13
GTC
2.72
GTG
3.37
GTA
0.58
7.8%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0.3
TCC
1.75
TCG
1.22
TCA
0.38
AGT
0.34
AGC
1.46
 
 
 
 
5.45%
ArgACG
1
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
4
CGT
0.7
CGC
2.32
CGG
2.75
CGA
0.35
 
 
 
 
AGG
0.63
AGA
0.27
7.02%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
1.31
CTC
3.54
CTG
4.48
CTA
0.12
 
 
 
 
TTG
0.59
TTA
0.1
10.14%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
1.02
TTC
2.89
 
 
 
 
3.91%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
0.8
AAC
2.11
 
 
 
 
2.91%
Lys 
 
 
 
CTT
 
TTT
1
1
 
 
 
 
AAG
2.97
AAA
1.08
4.05%
AspATC
 
GTC
2
 
 
 
 
2
GAT
1.81
GAC
3.54
 
 
 
 
5.35%
Glu 
 
 
 
CTC
 
TTC
2
2
 
 
 
 
GAG
4.03
GAA
2.45
6.48%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.66
CAC
1.39
 
 
 
 
2.05%
Gln 
 
 
 
CTG
 
TTG
2
2
 
 
 
 
CAG
2.37
CAA
0.38
2.75%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
2
CAT
1
TAT
 
3
ATT
1.11
ATC
4.05
 
 
ATA
0.41
5.57%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
2.35
 
 
2.35%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0.8
TAC
1.76
 
 
 
 
2.56%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.15
TAG
0.08
TAA
0.07
0.3%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.2
TGC
0.98
 
 
 
 
1.18%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1
 
 
1%
SelCys 
 
 
 
 
 
TCA
1
1
 
 
 
 
 
 
 
 
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