Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

Ala tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCTGTAGCTCAGTTGGGAGAGCGCTTGAATGGCATTCAAGAG...........GtCGTCAGTTCGATCCTGATCAGCTCCACCA tRNA-Ala-GGC-1-1 Sc: 76.2 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGATGTAGCTCAGTTGGGAGAGCGATGCGTTCGCAACGCATAG...........GcCGTCGGTTCGATCCCGATCATCTCCACCA tRNA-Ala-CGC-1-1 Sc: 81.3 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<.... GGGGGTGTAGCTCAGCTGGGAGAGCACCTGCCTTGCACGCAGGGG...........GtCATCGGTTCGATCCCGTTCACCTCCACCA tRNA-Ala-TGC-1-1 Sc: 78.2 GGGGGTGTAGCTCAGCTGGGAGAGCACCTGCCTTGCACGCAGGGG...........GtCATCGGTTCGATCCCGTTCACCTCCACCA tRNA-Ala-TGC-1-2 Sc: 78.2
Arg tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCTCGTAGCTCAGCTGGAtAGAGCAACGGACTACGAATCCGTAG...........GtCGGGAGTTCGAATCTCTCCGAGCGCGCCA tRNA-Arg-ACG-1-1 Sc: 87.5 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGGTTAGCTCAGTTGGAtAGAGTACAGGCCTCCGAAGCCTGGG...........GtCGTGGGTTCGAATCCCATGCCGCCCGCCA tRNA-Arg-CCG-1-1 Sc: 81.9 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCCGTAGCTCAGCTGGAtAGAGTACCTGGCTTCGAACCAGGGT...........GtCGGCAGTTCGAATCTGTCCGGGCGCGCCA tRNA-Arg-TCG-1-1 Sc: 81.4 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTCCCCGTAGCTCAGCAGGAtAGAGCACTTCCCTCCTAAGGAAGGG...........GtCGGACGTTCGAATCGTCTCGGGGACGCCA tRNA-Arg-CCT-1-1 Sc: 73.8 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCTGTGGCTCAGTTGGAtAGAGCAACGGACTTCTAATCCGTAG...........GtCAGAGGTTCGAATCCTCTCAGGCGCGCCA tRNA-Arg-TCT-1-1 Sc: 89.7
Asn tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TCCCCAGTAGCTCAGTCGGTAGAGCGGGTGGCTGTTAACCACCAT...........GtCCGTGGTTCGAGTCCGCGCTGGGGAGCCA tRNA-Asn-GTT-1-1 Sc: 71.4
Asp tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGTCGTAGTTAAGTTGGTtATAACGCCGGCCTGTCACGCCGGAG...........GcCGCGGGTTCGAGCCCCGTCGACCCCGCCA tRNA-Asp-GTC-1-1 Sc: 85.5 GGGGTCGTAGTTAAGATGGTtATAACGCCGGCCTGTCACGCCGGAG...........GcCGCGGGTTCGAGCCCCGTCGACCCCGCCA tRNA-Asp-GTC-2-1 Sc: 82.1
Cys tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCGACGTAGCCAAGTGGTA.AGGCAGAGGTCTGCAAAACCTTTA...........TtCAGCGGTTCAAATCCGCTCGTCGCCTCCA tRNA-Cys-GCA-1-1 Sc: 78.3
Gln tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... TGGGGTGTCGCCAAGCGGTA.AGGCAACGGACTCTGACTCCGTC............AtCCGAGGTTCGAATCCTCG.CACCCCAGCCA tRNA-Gln-CTG-1-1 Sc: 72.1 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... TGGGGCGTCGCCAAGCGGTA.AGGCACCGGATTTTGATTCCGGCA...........TtCCCAGGTTCGATCCCTGG.CGCCCCAGCCA tRNA-Gln-TTG-1-1 Sc: 70.3
Glu tRNAs
>>>>>>>..>>>>...............<<<<.>>>>>.......<<<<<......................>>>>>.......<<<<<<<<<<<<.... GGTCCCATCGTCT...AGC..GGTt.A.GGACACCGGCCTTTCACGTCGGTA.................A.CAGGGGTTCAAGTCCCCTTGGGATCACCA tRNA-Glu-TTC-1-1 Sc: 66.0 GTCCCCTTCGTCT...AGCCcGGCccA.GGACACCGCCCTTTCACGGCGGCG.................A.CACCGGTTCAAATCCGGTAGGGGACGCCA tRNA-Glu-TTC-2-1 Sc: 65.2 >>>.>.....>...................<..>.>.>.......<.<.<....>.>>.....<<.<.....>>>>>.......<<<<<..<.<<<.... GGATGGCTAAAATaaaAACT.GGT..A...TAAGCATGTAGACGCCTTTCGTGTACGA.....TCTTCGGaCGCGGGTTCGATTCCCGCCACCTCCACCA tRNA-Glu-TTC-3-1 Sc: 26.3
Gly tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGAATAACTCAGT.GGT.A.GAGTGCAACCTTGCCAAGGTTGAA...........GtCGCGGGTTCGAACCCCGTTTCCCGCTCCA tRNA-Gly-GCC-1-1 Sc: 82.8 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGAATAACTCAGT.GGT.A.GAGTGTCAGCTTCCCAAGCTGAAG...........GtCGCGGGTTCGAATCCCGTTTCCCGCTCCA tRNA-Gly-CCC-1-1 Sc: 90.2 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGAGTAGCTCAGTTGGCtA.GAGCGTCAGCCTTCCAAGCTGAGG...........GtCGCGGGTTCGAGTCCCGTTTCCCGCTCCA tRNA-Gly-TCC-1-1 Sc: 91.9
His tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTGGCTATGGTGAAGCGGTtA.ACACAAACGACTGTGACTCGTTCA...........TaCGTGGGTTCGAATCCCACTAGCCACCCCA tRNA-His-GTG-1-1 Sc: 69.4
Ile tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCTGTAGCTCAGCTGGCtAGAGCACACGACTGATAATCGTGAG...........GtCGATGGTTCGAGTCCATCCAGGCCCACCA tRNA-Ile-GAT-1-1 Sc: 89.2 GGGCCTGTAGCTCAGCTGGCtAGAGCACACGACTGATAATCGTGAG...........GtCGATGGTTCGAGTCCATCCAGGCCCACCA tRNA-Ile-GAT-1-2 Sc: 89.2
Leu tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCGAAGTGGTGGAATTGGTaGACACGCCATCTTGAGGGGGTGGTGGGCGACA...GCCCGTGCGAGTTCGATTCTCGC.CTTCGGCACCA tRNA-Leu-GAG-1-1 Sc: 70.2 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCGAAGTGGCGGAATTGGTaGACGCGCTAGATTCAGGTTCTAGTATTCGCAA...GGATGTGCTGGTTCGATTCCAGT.CTTCGGCACCA tRNA-Leu-CAG-1-1 Sc: 75.2 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.........<<<..>>>>>.......<<<<<.<<<<<<<.... GCGAGATTGGCGGAATTGGCaGACGCACCAGACTTAGGATCTGGCGGG.GTAA....CTCGTGGGAGTTCAAGTCTCCC.ATCTCGCACCA tRNA-Leu-TAG-1-1 Sc: 72.5 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCGGAGTGGTGAAATTGGTaGACGCACTGGACTCAAAATCCAGCGGGAGCAA...TCCCATGCCGGTTCGACCCCGGC.CTCCGGCACCA tRNA-Leu-CAA-1-1 Sc: 76.4 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCCGGGTGGCGGAATTGGTaGACGCAAGGGACTTAAAATCCCTCGTTCGCAA...GGACGTACCGGTTCGATTCCGGT.CCCGGGCACCA tRNA-Leu-TAA-1-1 Sc: 80.7
Lys tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GAGCCGCTAGCTCAGTCGGTAGAGCACCTGACTTTTAATCAGGTG...........GtCGTTGGTTCGACCCCAACGCGGCTCACCA tRNA-Lys-TTT-1-1 Sc: 83.0
Met/Ile2 tRNAs
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGGTGGAGCAGTCtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCAGAGGTTCAAATCCTCTCCCCGCAACCA tRNA-fMet-CAT-1-1 Sc: 78.9 >>>>>.>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<.<<<<<.... GGCGGCGTAGCTCAGCT.GGTtAGAGCACACGGCTCATATCCGTGAT...........GtCCGGGGTTCAAGTCCCTGCACCGCCACCA tRNA-Met-CAT-1-1 Sc: 73.4 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCTATAGCTCAGTT.GGCtAGAGCTACCGGCTCATAACCGGTCG...........GtCCCAGGTTCGAGTCCTGGTGGGCCCACCA tRNA-Ile2-CAT-1-1 Sc: 82.3
Phe tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCAGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGT...........GtCGGCGGTTCGATTCCGTCTCTGGGCACCA tRNA-Phe-GAA-1-1 Sc: 81.2
Pro tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGTGCGTAGCGCAGCCtGGT.AGCGCACTAGACTGGGGGTCTAGGG...........GtCGAAGGTTCGAATCCTTTCGCACCGACCA tRNA-Pro-GGG-1-1 Sc: 75.3 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGATGTAGCGCAGCCtGGT.AGCGCACCTGCTTCGGGAGCAGGGG...........GcCGCTGGTTCGAATCCAGTCATCCCGACCA tRNA-Pro-CGG-1-1 Sc: 83.6 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGGTGTAGCGCAGCCtGGCtAGCGCACCTGCCTTGGGAGCAGGGG...........GcCGGAGGTTCGAATCCTCTCACCCCGACCA tRNA-Pro-TGG-1-1 Sc: 83.3
SeC tRNAs
>>>>>>>...>>>>.........<<<<.>>>>>.......<<<<<..>>>>>>>.......<<<<<<<.>>>>>.......<<<<<....<<<<<<<.... GGAAGCAcgtCGGTCGCTGGTgGGCCGCCCGGTCTTCAAAACCGGTGGGGGGGAtgaGAAATCTCCCCGGTGGGTTCGATTCCCAT...gTGCTTCCGCCA tRNA-SeC-TCA-1-1 Sc: 132.6
Ser tRNAs
>>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAGAGATGTCCGAGC.GGTtgA.AGGAGCACGCCTGGAAAGCGTGT.GTACGTTAATa.GCGTAC.CGAGGGTTCGAATCCCTC..TCTCTCCGCCA tRNA-Ser-GGA-1-1 Sc: 81.3 >>>>>>>...>>>...........<<<..>>>>>.......<<<<<..>>>>>........<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAGAGGTGTCCGAGT.GGTcgA.TGGTGCCTGACTCGAAATCAGGT.GTACG.GCAA...CGTAC.CTAGGGTTCGAATCCCTA..CCTCTCCGCCA tRNA-Ser-CGA-1-1 Sc: 75.6 >>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>............<<<..>>>>>.......<<<<<..<<<<<<<.... GGAGGAATGGCCGAGT.GGTtgA.AGGCGGCGGTCTTGAAAACCGTTGAAC...GAAA.....GTTCCGTGGGTTCGAATCCTAC..TTCCTCCGCCA tRNA-Ser-TGA-1-1 Sc: 85.6 >>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAGAGATGGCCGAGTAGGTcgA.AGGCGCTCGCCTGCTAAGCGAGTATACTGGGAAA..CCGGTATCGAGGGTTCGAATCCCTC..TCTCTCCGCCA tRNA-Ser-GCT-1-1 Sc: 92.7
Sup tRNAs
Thr tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCACATAGCTCAGGAGGTAGAGCACTTCCTTGGTAAGGAAGAG...........GtCTCCGGTTCGAGTCCGGATGTGGGCTCCA tRNA-Thr-GGT-1-1 Sc: 77.9 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGTTATAGCTCAGTTGGTAGAGCAATTGATTCGTAATCAATAG...........GtCAGCGGTTCGACTCCGCTTAACGGCTCCA tRNA-Thr-CGT-1-1 Sc: 83.5 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<.... GCTGGCGTAGCTCAATTGGTAGAGCAGCTGACTTGTAATCAGCAG...........GtTGCGGGTTCGAGTCCCATCGCCAGCTCCA tRNA-Thr-TGT-1-1 Sc: 80.3
Trp tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<.... AGGCCAGTAGCTCTAACGGCtAGAGCACCGGTCTCCAAAACCGGGT...........GtTGTGGGTTCGAATCCCTCCTGGCCTGCCA tRNA-Trp-CCA-1-1 Sc: 74.1
Tyr tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GGAGGGATTCCCGAGCGGCcaA.AGGGAACAGACTGTAAATCTGTCGTCGTA.....GACTtCGGAGGTTCGAATCCTCC.TCCCTCCACCA tRNA-Tyr-GTA-1-1 Sc: 77.8
Val tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGCGCGTAGCTCAGG.GGTA.GAGCACTAGCTCGACACGCTAGGG...........GtCGGCGGTTCGAAACCGCCCGCGCCTACCA tRNA-Val-GAC-1-1 Sc: 72.1 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGATTAACTCAGC.GGGA.GAGTGCTACCTTCACACGGTAGAA...........GtCGCTGGTTCGATCCCAGCATCGCCCACCA tRNA-Val-CAC-1-1 Sc: 77.0 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGAATAGCTCAGCTGGGA.GAGCGCCAGCCTTACAAGCTGGAT...........GtCACAGGTTCGATCCCTGTTTCGCCCACCA tRNA-Val-TAC-1-1 Sc: 85.7