tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results (on host zam.soe.ucsc.edu)
Started: Thu Aug  3 16:15:51 PDT 2017

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Search Mode:                       Bacterial
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-bact.cm
                                   TRNAinf-bact-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         1
Seqs w/at least 1 hit:  1
Bases read:             5136364 (x2 for both strands)
Bases in tRNAs:         4336
tRNAs predicted:        54
Av. tRNA length:        80
Script CPU time:        0.63 s
Scan CPU time:          47.77 s
Scan speed:             215.0 Kbp/sec

First pass search(es) ended: Thu Aug  3 16:15:54 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     54
Infernal-confirmed tRNAs:     50
Bases scanned by Infernal:  5416
% seq scanned by Infernal:  0.1 %
Script CPU time:          0.30 s
Infernal CPU time:            33.06 s
Scan speed:               163.8 bp/sec

Infernal analysis of tRNAs ended: Thu Aug  3 16:16:27 PDT 2017

Overall scan speed: 125644.9 bp/sec