tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 48
Selenocysteine tRNAs (TCA) 1
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 1
Total tRNAs 50
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 4357
Number of Codons: 1488648

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
2
4
GCT
1.22
GCC
4.14
GCG
2.14
GCA
1.73
9.23%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
1.4
GGC
3.36
GGG
1.93
GGA
1.26
7.95%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.63
CCC
1.31
CCG
1.99
CCA
0.44
4.37%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.62
ACC
2.99
ACG
1.22
ACA
0.76
5.59%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
1.45
GTC
2.52
GTG
2.32
GTA
0.92
7.21%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0.5
TCC
1.62
TCG
1.02
TCA
0.64
AGT
0.55
AGC
1.59
 
 
 
 
5.92%
ArgACG
1
GCG
 
CCG
1
TCG
1
 
 
 
 
CCT
1
TCT
1
5
CGT
0.76
CGC
1.59
CGG
1.59
CGA
0.38
 
 
 
 
AGG
0.9
AGA
0.52
5.74%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
1.65
CTC
2.59
CTG
3.85
CTA
0.24
 
 
 
 
TTG
1.2
TTA
0.36
9.89%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
1.66
TTC
2.44
 
 
 
 
4.1%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
1.41
AAC
2.32
 
 
 
 
3.73%
Lys 
 
 
 
CTT
 
TTT
1
1
 
 
 
 
AAG
3.14
AAA
2.29
5.43%
AspATC
 
GTC
2
 
 
 
 
2
GAT
2.34
GAC
2.89
 
 
 
 
5.23%
Glu 
 
 
 
CTC
 
TTC
3
3
 
 
 
 
GAG
3.13
GAA
3.25
6.38%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.01
CAC
0.99
 
 
 
 
2%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
2.33
CAA
0.73
3.06%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
2
CAT
1
TAT
 
3
ATT
1.59
ATC
3.55
 
 
ATA
1.05
6.19%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
2.42
 
 
2.42%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
1.3
TAC
1.62
 
 
 
 
2.92%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.13
TAG
0.07
TAA
0.1
0.3%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.3
TGC
0.9
 
 
 
 
1.2%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.04
 
 
1.04%
SelCys 
 
 
 
 
 
TCA
1
1
 
 
 
 
 
 
 
 
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