tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 49
Selenocysteine tRNAs (TCA) 1
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 1
Predicted pseudogenes 4
Total tRNAs 55
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 4811
Number of Codons: 1502000

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
0.37
GCC
8.22
GCG
5.19
GCA
0.52
14.3%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
0.86
GGC
5.96
GGG
2.36
GGA
0.43
9.61%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.15
CCC
2.23
CCG
3.83
CCA
0.16
6.37%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.08
ACC
4.02
ACG
1.77
ACA
0.1
5.97%
ValAAC
 
GAC
1
CAC
2
TAC
1
4
GTT
0.1
GTC
5.75
GTG
4.1
GTA
0.07
10.02%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0
TCC
1.5
TCG
1.6
TCA
0.09
AGT
0.09
AGC
1.39
 
 
 
 
4.67%
ArgACG
1
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
2
TCT
2
6
CGT
0.38
CGC
3.84
CGG
3.71
CGA
0.27
 
 
 
 
AGG
0.23
AGA
0.04
8.47%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
0.07
CTC
3.57
CTG
6.79
CTA
0.05
 
 
 
 
TTG
0.23
TTA
0.01
10.72%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
0.04
TTC
2.46
 
 
 
 
2.5%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
0.03
AAC
1.35
 
 
 
 
1.38%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
1.22
AAA
0.02
1.24%
AspATC
 
GTC
1
 
 
 
 
1
GAT
0.24
GAC
5.96
 
 
 
 
6.2%
Glu 
 
 
 
CTC
2
TTC
1
3
 
 
 
 
GAG
5.31
GAA
0.26
5.57%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.07
CAC
1.99
 
 
 
 
2.06%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
2.63
CAA
0.08
2.71%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
0.03
ATC
2.51
 
 
ATA
0.02
2.56%
fMet/Met 
 
 
 
CAT
2/1
 
 
3
 
 
 
 
ATG
1.37
 
 
1.37%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0
TAC
1.68
 
 
 
 
1.68%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.28
TAG
0.03
TAA
0
0.31%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0
TGC
0.65
 
 
 
 
0.65%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.48
 
 
1.48%
SelCys 
 
 
 
 
 
TCA
 
1
 
 
 
 
 
 
 
 
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