tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 36
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 1
Total tRNAs 37
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 1571
Number of Codons: 499619

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
 
TGC
1
2
GCT
2.73
GCC
1.37
GCG
2.01
GCA
0.75
6.86%
GlyACC
 
GCC
1
CCC
 
TCC
1
2
GGT
0.94
GGC
2.07
GGG
2.16
GGA
0.62
5.79%
ProAGG
 
GGG
1
CGG
 
TGG
1
2
CCT
1.6
CCC
0.87
CCG
0.32
CCA
0.48
3.27%
ThrAGT
 
GGT
1
CGT
 
TGT
1
2
ACT
1.32
ACC
1.39
ACG
0.97
ACA
0.69
4.37%
ValAAC
 
GAC
1
CAC
 
TAC
1
2
GTT
1.53
GTC
0.77
GTG
2.72
GTA
0.59
5.61%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
 
TGA
1
ACT
 
GCT
1
 
 
 
 
3
TCT
1.5
TCC
0.55
TCG
0.39
TCA
0.6
AGT
0.96
AGC
2.7
 
 
 
 
6.7%
ArgACG
 
GCG
1
CCG
 
TCG
1
 
 
 
 
CCT
1
TCT
1
4
CGT
0.49
CGC
0.85
CGG
0.1
CGA
0.23
 
 
 
 
AGG
0.83
AGA
0.93
3.43%
LeuAAG
 
GAG
1
CAG
 
TAG
1
 
 
 
 
CAA
1
TAA
1
4
CTT
1.65
CTC
0.97
CTG
0.42
CTA
0.8
 
 
 
 
TTG
2.97
TTA
4.41
11.22%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
4.26
TTC
1.14
 
 
 
 
5.4%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
3.32
AAC
2.53
 
 
 
 
5.85%
Lys 
 
 
 
CTT
 
TTT
1
1
 
 
 
 
AAG
2.05
AAA
6.87
8.92%
AspATC
 
GTC
1
 
 
 
 
1
GAT
3.46
GAC
1.29
 
 
 
 
4.75%
Glu 
 
 
 
CTC
 
TTC
2
2
 
 
 
 
GAG
1.81
GAA
5.01
6.82%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.46
CAC
0.66
 
 
 
 
2.12%
Gln 
 
 
 
CTG
 
TTG
1
1
 
 
 
 
CAG
0.55
CAA
3.13
3.68%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
3.52
ATC
2.73
 
 
ATA
0.92
7.17%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
2.2
 
 
2.2%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
2.5
TAC
1.11
 
 
 
 
3.61%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.09
TAG
0.05
TAA
0.17
0.31%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.3
TGC
0.72
 
 
 
 
1.02%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0.69
 
 
0.69%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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