tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 58
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 58
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 3054
Number of Codons: 954176

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
5
7
GCT
0.94
GCC
5.26
GCG
5.47
GCA
1.41
13.08%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
1.27
GGC
5.48
GGG
1.41
GGA
0.4
8.56%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.46
CCC
2.13
CCG
2.27
CCA
0.35
5.21%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.28
ACC
2.95
ACG
1.77
ACA
0.53
5.53%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
0.91
GTC
2.92
GTG
3.12
GTA
0.23
7.18%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0.2
TCC
0.76
TCG
1.97
TCA
0.24
AGT
0.26
AGC
1.56
 
 
 
 
4.99%
ArgACG
1
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
4
CGT
1.02
CGC
4.36
CGG
1.03
CGA
0.19
 
 
 
 
AGG
0.12
AGA
0.06
6.78%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
1.19
CTC
0.74
CTG
6.6
CTA
0.31
 
 
 
 
TTG
1.39
TTA
0.1
10.33%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
1.64
TTC
2.03
 
 
 
 
3.67%
AsnATT
 
GTT
2
 
 
 
 
2
AAT
1.09
AAC
1.56
 
 
 
 
2.65%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
1.36
AAA
1.15
2.51%
AspATC
 
GTC
2
 
 
 
 
2
GAT
3.41
GAC
2.53
 
 
 
 
5.94%
Glu 
 
 
 
CTC
 
TTC
2
2
 
 
 
 
GAG
2.78
GAA
2.16
4.94%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.25
CAC
0.81
 
 
 
 
2.06%
Gln 
 
 
 
CTG
 
TTG
1
1
 
 
 
 
CAG
2.34
CAA
1.26
3.6%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
5
CAT
1
TAT
 
6
ATT
1.23
ATC
4.17
 
 
ATA
0.13
5.53%
fMet/Met 
 
 
 
CAT
5/1
 
 
6
 
 
 
 
ATG
2.75
 
 
2.75%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
1.6
TAC
0.61
 
 
 
 
2.21%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.14
TAG
0.05
TAA
0.13
0.32%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.1
TGC
0.55
 
 
 
 
0.65%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.35
 
 
1.35%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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