Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

Ala tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCACCA tRNA-Ala-TGC-1-1 Sc: 81.8 GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCACCA tRNA-Ala-TGC-1-2 Sc: 81.8 GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCACCA tRNA-Ala-TGC-1-3 Sc: 81.8 GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCA... tRNA-Ala-TGC-2-1 Sc: 74.9
Arg tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCGCCCATAGCTCAACTGGAtA.GAGTACTTGACTACGAATCAAGCG...........GtTAGAGGTTCGACTCCTCT.TGGGCGCA... tRNA-Arg-ACG-1-1 Sc: 72.3 GCGCCCATAGCTCAACTGGAtA.GAGTACTTGACTACGAATCAAGCG...........GtTAGAGGTTCGACTCCTCT.TGGGCGCA... tRNA-Arg-ACG-1-2 Sc: 72.3 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCCCTCGTGGTGCAAC.GGAtA.GCACGTAAGATTCCGGTTCTTAAA...........A.TGGGGGTTCGATTCCCTC.CGAGGGCA... tRNA-Arg-CCG-1-1 Sc: 58.6 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCCCATATAGTTAAAC.GGAtA.TAACAAGCCCCTCCTAAGGGCTA............GtTCGTGGTTCGATTCCGCG.TATGGGCG... tRNA-Arg-CCT-1-1 Sc: 52.0 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GTCCTGATAGCTCAGCTGGAtA.GAGCAACGGCCTTCTAAGCCGTCG...........GtCGGGGGTTCGAATCCCTC.TCAGGACG... tRNA-Arg-TCT-1-1 Sc: 76.1
Asn tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TCCACAGTAGCTCAGTTGGTAGAGCAATCGGCTGTTAACCGATCG...........GtCGCAGGTTCGAGTCCTGCCTGTGGAGCCA tRNA-Asn-GTT-1-1 Sc: 87.0 TCCACAGTAGCTCAGTTGGTAGAGCAATCGGCTGTTAACCGATCG...........GtCGCAGGTTCGAGTCCTGCCTGTGGAGCCA tRNA-Asn-GTT-1-2 Sc: 87.0 TCCACAGTAGCTCAGTTGGTAGAGCAATCGGCTGTTAACCGATCG...........GtCGCAGGTTCGAGTCCTGCCTGTGGAG... tRNA-Asn-GTT-2-1 Sc: 80.2 TCCACAGTAGCTCAGTTGGTAGAGCAATCGGCTGTTAACCGATCG...........GtCGCAGGTTCGAGTCCTGCCTGTGGAG... tRNA-Asn-GTT-2-2 Sc: 80.2
Asp tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGTTCCGTGGTGTAGGGGTtA.ACATGCCTGCCTGTCACGCAGGAG...........AtCGCGGGTTCAAATCCCGTCGGGACCGCCA tRNA-Asp-GTC-1-1 Sc: 71.5 GGTTCCGTGGTGTAGGGGTtA.ACATGCCTGCCTGTCACGCAGGAG...........AtCGCGGGTTCAAATCCCGTCGGGACCGCCA tRNA-Asp-GTC-1-2 Sc: 71.5 GGTTCCGTGGTGTAGGGGTtA.ACATGCCTGCCTGTCACGCAGGAG...........AtCGCGGGTTCAAATCCCGTCGGGACCG... tRNA-Asp-GTC-2-1 Sc: 64.6
Cys tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<.<<<<<<<.... GGCGCCATAGCCAAGTGGTA.AGGCAGAGGTCTGCAAAACCTTT...........AtCACCGGTTCAAATCCGGT.TGGCGCCTCCA tRNA-Cys-GCA-1-1 Sc: 78.9
Gln tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TGGGCTATAGCCAAGCGGTA.AGGCAACGGATTTTGATTCCGTCA...........TgCGCTGGTTCGAATCCAGCTAGCCCAG... tRNA-Gln-TTG-1-1 Sc: 69.9 TGGGCCATAGCCAAGCGGTA.AGGCAACGGACTTTGACTCCGTCA...........TgCGTTGGTTCGAATCCAGCTGGCCCAG... tRNA-Gln-TTG-2-1 Sc: 68.9
Glu tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGCCCGTTGGTCAAGCGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAATCCCGTACGGGTCA... tRNA-Glu-TTC-1-1 Sc: 72.5 GGCCCGTTGGTCAAGCGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAATCCCGTACGGGTCA... tRNA-Glu-TTC-1-2 Sc: 72.5 GGCCCGTTGGTCAAGCGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAATCCCGTACGGGTCA... tRNA-Glu-TTC-1-3 Sc: 72.5 GGCCCGTTGGTCAAGCGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAATCCCGTACGGGTCA... tRNA-Glu-TTC-1-4 Sc: 72.5
Gly tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCGGAAGTAGTTCAGTGGTA.GAACATCACCTTGCCAAGGTGGGG...........GtCGCGGGTTCGAACCCCGT.CTTCCGCTCCA tRNA-Gly-GCC-1-1 Sc: 84.8 GCGGAAGTAGTTCAGTGGTA.GAACATCACCTTGCCAAGGTGGGG...........GtCGCGGGTTCGAACCCCGT.CTTCCGCT... tRNA-Gly-GCC-2-1 Sc: 78.0 GCGGAAGTAGTTCAGCGGTA.GAACATCACCTTGCCAAGGTGGGG...........GtCGCGGGTTCGAACCCCGT.CTTCCGCT... tRNA-Gly-GCC-3-1 Sc: 77.0 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCGGGTGTAGTTTAGTGGTA.AAACTACAGCCTTCCAAGCTGTT............GtCGTGGGTTCGATTCCCAT.CACCCGCT... tRNA-Gly-TCC-1-1 Sc: 74.4 GCGGGTGTAGTTTAGTGGTA.AAACTACAGCCTTCCAAGCTGTT............GtCGTGGGTTCGATTCCCAT.CACCCGCT... tRNA-Gly-TCC-1-2 Sc: 74.4
His tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGATGTGGCGAAGTGGTtA.ACGCACCTGATTGTGGTTCAGGCA...........TtCGTGGGTTCGATTCCCATCATCCGCC... tRNA-His-GTG-1-1 Sc: 68.5 GCGGATATGGCGAAGTGGTtA.ACGCACCTGATTGTGGTTCAGGCA...........TtCGTGGGTTCGATTCCCATTATCCGCC... tRNA-His-GTG-2-1 Sc: 66.7
Ile tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGATGGTTCGAGTCCATTTAGGCCCA... tRNA-Ile-GAT-1-1 Sc: 81.2 GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGATGGTTCGAGTCCATTTAGGCCCA... tRNA-Ile-GAT-1-2 Sc: 81.2 GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGATGGTTCGAGTCCATTTAGGCCCA... tRNA-Ile-GAT-1-3 Sc: 81.2
Leu tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>..............<<<..>>>>>.......<<<<<.<<<<<<<.... GCGGTCGTGGCGGAATCGGCaGACGCGCTAGGTTGAGGGCCTAGTGGGG..TAAAa.......CCCGTGGAGGTTCAAGTCCTCT.CGGCCGCA... tRNA-Leu-GAG-1-1 Sc: 58.8 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.>..........<.<<<..>>>>>.......<<<<<.<<<<<<<.... GCGGGTGTGGCGGAATTGGCaGACGCACCAGATTTAGGATCTGGC.GCCGC..........GAGGCGTGGGGGTTCAAGTCCCTT.CACCCGCA... tRNA-Leu-TAG-1-1 Sc: 67.5 GCGGGTGTGGCGGAATTGGCaGACGCACCAGATTTAGGATCTGGC.GCCGC..........GAGGCGTGGGGGTTCAAGTCCCTT.CACCCGCA... tRNA-Leu-TAG-1-2 Sc: 67.5 >>>>>>>..>>>...........<<<.>.>>>.......<<<.<..>>>>............<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCGGCGTGGCGGAATTGGCaGACGCGCTGGACTCAAAATCCTGT.GCCC.GCAA.......GGGCGTGCCGGTTCGACCCCGGC.CGCCGGTA... tRNA-Leu-CAA-1-1 Sc: 67.0 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>..........<<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCGGGGTGGCGGAACTGGCaGACGCACAGGACTTAAAATCCTGC.GGATAGTGA......TATCCGTACCGGTTCGATTCCGGT.CCTCGGCA... tRNA-Leu-TAA-1-1 Sc: 68.4 GCCGGGGTGGCGGAACTGGCaGACGCACAGGACTTAAAATCCTGC.GGATAGTGA......TATCCGTACCGGTTCGATTCCGGT.CCTCGGCA... tRNA-Leu-TAA-1-2 Sc: 68.4
Lys tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTTGTTAGCTCAGTTGGTAGAGCAGCTGACTCTTAATCAGCGG...........GtCGGGGGTTCGAAACCCTCACAACCCA... tRNA-Lys-CTT-1-1 Sc: 78.6 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GAGCCGTTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGG...........GtCGCTGGTTCGAACCCAGCACGGCTCA... tRNA-Lys-TTT-1-1 Sc: 83.0 GAGCCGTTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGG...........GtCGCTGGTTCGAACCCAGCACGGCTCA... tRNA-Lys-TTT-1-2 Sc: 83.0 GAGCCGTTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGG...........GtCGCTGGTTCGAACCCAGCACGGCTCA... tRNA-Lys-TTT-1-3 Sc: 83.0
Met/Ile2 tRNAs
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGGTGGAGCAGTCtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTGCCCCCGCAA... tRNA-fMet-CAT-1-1 Sc: 72.7 CGCGGGGTGGAGCAGTCtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTGCCCCCGCAA... tRNA-fMet-CAT-1-2 Sc: 72.7 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<.... GGCGGTGTAGCTCAGCT.GGCtAGAGCATTCGGTTCATACCCGAAAG...........GtCGTGGGTTCGACTCCCTCCGCCGCTA... tRNA-Met-CAT-1-1 Sc: 69.4 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGACCTTTAGCTCAGTT.GGTtAGAGCAGACGGCTCATAACCGTCCG...........GtCGCAGGTTCGAGTCCTGCAAGGTCCA... tRNA-Ile2-CAT-1-1 Sc: 81.9
Phe tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCTTGGTAGCTCAGTTGGTAGAGCACTTGATTGAAGCTCAAGGT...........GtCGGCAGTTCGATTCTGTCCCAAGCCA... tRNA-Phe-GAA-1-1 Sc: 72.3 GGCTTGGTAGCTCAGTTGGTAGAGCACTTGATTGAAGCTCAAGGT...........GtCGGCAGTTCGATTCTGTCCCAAGCCA... tRNA-Phe-GAA-1-2 Sc: 72.3
Pro tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGAAGTAGCTCAGCTtGGTAGAGCACTTGGTTTGGGACCAAGGG...........GtCGCAGGTTCGAATCCTGTCTTCCCGA... tRNA-Pro-TGG-1-1 Sc: 79.9 CGGGAAGTAGCTCAGCTtGGTAGAGCACTTGGTTTGGGACCAAGGG...........GtCGCAGGTTCGAATCCTGTCTTCCCGA... tRNA-Pro-TGG-1-2 Sc: 79.9
SeC tRNAs
Ser tRNAs
>>>>>>>..>>>..............<<<.>>>>>.......<<<<<..>>>>>>>....<<<<<<<.>>>>>.......<<<<<..<<<<<<<.... GGAGAGCTGTCCGAGT..GGCcgA.AGGAGCACGGTTGGAAACCGTGT.AGGCGGTGTAAGCTGTCTCAAGGGTTCGAATCCCTT..GCTCTCCG... tRNA-Ser-GGA-1-1 Sc: 73.6 >>>>>>>..>>>..............<<<.>>>>>.......<<<<<...>>>>>......<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAGAAATACCCAAGTCcGGCtgA.AGGGGACAGACTCGAAATCTGTTAGGCGGT.GTAT.GCCGCGCCGGGGTTCGAATCCCCG..TTTCTCCG... tRNA-Ser-CGA-1-1 Sc: 72.0 >>>>>>>..>>>..............<<<.>>>>>.......<<<<<...>>>>........<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAGGAATACCCAAGTCtGGCtgA.AGGGATCGGTCTTGAAAACCGACAGGCGGG.TAAT.ACCGCGCGGGGGTTCGAATCCCTC..TTCCTCCG... tRNA-Ser-TGA-1-1 Sc: 74.2 >>>>>>>..>>>..............<<<.>>>>>.......<<<<<...>>>>>......<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGGGAAGTACTCAAGT..GGCtgA.AGAGGCGCCCCTGCTAAGGGTGTAGGTCGC.TCGC.GCGGCGCGAGGGTTCAAATCCCTC..CTTCTCCGCCA tRNA-Ser-GCT-1-1 Sc: 71.8 GGGGAAGTACTCAAGT..GGCtgA.AGAGGTGCCCCTGCTAAGGGTATAGGTCGC.TCGC.GCGGCGCGAGGGTTCAAATCCCTC..CTTCTCCG... tRNA-Ser-GCT-2-1 Sc: 63.3
Sup tRNAs
Thr tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGCTTTAGCTCAGTT.GGTAGAGCACTTCCATGGTAAGGAAGGG...........GtCGTCGGTTCAAATCCGACAAGTGGCT... tRNA-Thr-GGT-1-1 Sc: 73.8 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGACTTAGCTCAATCtGGTAGAGCAACTGAATCGTAATCAGTAG...........GtTGCGGGTTCAATTCCTGCAGTCGGCA... tRNA-Thr-CGT-1-1 Sc: 73.1 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGGCTTAGCTCAGTT.GGTAGAGCAACTGATTTGTAATCAGTAG...........GtCGCGAGTTCGACTCTTGCAGCCGGCACCA tRNA-Thr-TGT-1-1 Sc: 90.2 GCCGGCTTAGCTCAGTT.GGTAGAGCAACTGATTTGTAATCAGTAG...........GtCGCGAGTTCGACTCTTGCAGCCGGCACCA tRNA-Thr-TGT-1-2 Sc: 90.2
Trp tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... AGGGGCATAGTTTAAAGGTA.GAACTGAGGTCTCCAAAACCTCCA...........GTGTGGGTTCGATTCCTACTGCCCCTGCCA tRNA-Trp-CCA-1-1 Sc: 66.2
Tyr tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>.........<<<...>>>>>.......<<<<<.<<<<<<<.... GGAGGGGTAGCGAAGTGGCtaA.ACGCGGCGGACTGTAAATCCGCTCCTT.......CGGGTtCGGTGGTTCGAATCCACT.CCCCTCCACCA tRNA-Tyr-GTA-1-1 Sc: 76.2 GGAGGGGTAGCGAAGTGGCtaA.ACGCGGCGGACTGTAAATCCGCTCCTT.......CGGGTtCGGTGGTTCGAATCCACT.CCCCTCCACCA tRNA-Tyr-GTA-1-2 Sc: 76.2
Val tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGTCCTGTAGCTCAGTTGGGAGAGTATCACCTTGACATGGTGGGG...........GtCGCTGGTTCGAGACCAGTCGGGACCA... tRNA-Val-GAC-1-1 Sc: 62.3 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGAGGTTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGG...........GtCAGCGGTTCGATCCCGTTAACCTCCACCA tRNA-Val-TAC-1-1 Sc: 83.6 GGAGGTTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGG...........GtCAGCGGTTCGATCCCGTTAACCTCCA... tRNA-Val-TAC-2-1 Sc: 76.7 GGAGGTTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGG...........GtCAGCGGTTCGATCCCGTTAACCTCCA... tRNA-Val-TAC-2-2 Sc: 76.7