tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 67
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 67
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 2781
Number of Codons: 862067

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
 
CGC
 
TGC
4
4
GCT
2.31
GCC
0.89
GCG
1.74
GCA
2.8
7.74%
GlyACC
 
GCC
3
CCC
 
TCC
2
5
GGT
2.37
GGC
1.46
GGG
0.91
GGA
1.91
6.65%
ProAGG
 
GGG
 
CGG
 
TGG
2
2
CCT
0.79
CCC
0.17
CCG
0.73
CCA
1.79
3.48%
ThrAGT
 
GGT
1
CGT
1
TGT
2
4
ACT
1.57
ACC
0.71
ACG
1.33
ACA
2.5
6.11%
ValAAC
 
GAC
1
CAC
 
TAC
3
4
GTT
2.65
GTC
0.93
GTG
1.36
GTA
2.12
7.06%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
2
 
 
 
 
5
TCT
1.2
TCC
0.65
TCG
0.62
TCA
1
AGT
1.37
AGC
0.84
 
 
 
 
5.68%
ArgACG
2
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
5
CGT
1.23
CGC
0.74
CGG
0.3
CGA
0.58
 
 
 
 
AGG
0.13
AGA
0.67
3.65%
LeuAAG
 
GAG
1
CAG
 
TAG
2
 
 
 
 
CAA
1
TAA
2
6
CTT
2.14
CTC
0.58
CTG
0.52
CTA
1.3
 
 
 
 
TTG
1.26
TTA
3.73
9.53%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
2
 
 
 
 
2
TTT
3.11
TTC
1.45
 
 
 
 
4.56%
AsnATT
 
GTT
4
 
 
 
 
4
AAT
3.18
AAC
1.43
 
 
 
 
4.61%
Lys 
 
 
 
CTT
1
TTT
3
4
 
 
 
 
AAG
1.03
AAA
6.05
7.08%
AspATC
 
GTC
3
 
 
 
 
3
GAT
3.98
GAC
1.43
 
 
 
 
5.41%
Glu 
 
 
 
CTC
 
TTC
4
4
 
 
 
 
GAG
1.31
GAA
6.1
7.41%
HisATG
 
GTG
2
 
 
 
 
2
CAT
1.25
CAC
0.53
 
 
 
 
1.78%
Gln 
 
 
 
CTG
 
TTG
2
2
 
 
 
 
CAG
0.52
CAA
2.9
3.42%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
3
CAT
1
TAT
 
4
ATT
5.05
ATC
1.83
 
 
ATA
0.92
7.8%
fMet/Met 
 
 
 
CAT
2/1
 
 
3
 
 
 
 
ATG
2.68
 
 
2.68%
TyrATA
 
GTA
2
 
 
 
 
2
TAT
2.3
TAC
1.08
 
 
 
 
3.38%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.06
TAG
0.04
TAA
0.23
0.33%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.4
TGC
0.2
 
 
 
 
0.6%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0.93
 
 
0.93%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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