tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results (on host hoag.soe.ucsc.edu)
Started: Thu Aug  3 22:24:14 PDT 2017

------------------------------------------------------------
Search Mode:                       Bacterial
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-bact.cm
                                   TRNAinf-bact-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
------------------------------------------------------------

First-pass Stats:
---------------
Sequences read:         1
Seqs w/at least 1 hit:  1
Bases read:             2882234 (x2 for both strands)
Bases in tRNAs:         5258
tRNAs predicted:        69
Av. tRNA length:        76
Script CPU time:        0.39 s
Scan CPU time:          12.45 s
Scan speed:             463.0 Kbp/sec

First pass search(es) ended: Thu Aug  3 22:24:15 PDT 2017

Infernal Stats:
-----------
Candidate tRNAs read:     69
Infernal-confirmed tRNAs:     68
Bases scanned by Infernal:  6638
% seq scanned by Infernal:  0.1 %
Script CPU time:          0.47 s
Infernal CPU time:            48.77 s
Scan speed:               136.1 bp/sec

Infernal analysis of tRNAs ended: Thu Aug  3 22:24:59 PDT 2017

Overall scan speed: 92855.5 bp/sec