tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0.2 (February 2019) scan results 
Started: Thu Apr 25 17:39:24 PDT 2019

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Search Mode:                       Bacterial
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-bact.cm
                                   TRNAinf-bact-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         3
Seqs w/at least 1 hit:  2
Bases read:             3721669 (x2 for both strands)
Bases in tRNAs:         4364
tRNAs predicted:        54
Av. tRNA length:        80
Script CPU time:        0.38 s
Scan CPU time:          51.97 s
Scan speed:             143.2 Kbp/sec

First pass search(es) ended: Thu Apr 25 17:39:40 PDT 2019

Infernal Stats:
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Candidate tRNAs read:     54
Infernal-confirmed tRNAs:     52
Bases scanned by Infernal:  5444
% seq scanned by Infernal:  0.1 %
Script CPU time:          0.32 s
Infernal CPU time:            37.73 s
Scan speed:               144.3 bp/sec

Infernal analysis of tRNAs ended: Thu Apr 25 17:40:13 PDT 2019

Overall scan speed: 82337.8 bp/sec