tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 48
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 4
Total tRNAs 52
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 3505
Number of Codons: 1090532

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
1.68
GCC
5.82
GCG
2.54
GCA
0.74
10.78%
GlyACC
 
GCC
2
CCC
1
TCC
1
4
GGT
0.99
GGC
3.35
GGG
3.33
GGA
1.04
8.71%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.86
CCC
2.95
CCG
1.7
CCA
0.43
5.94%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.39
ACC
3.43
ACG
0.69
ACA
0.16
4.67%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
0.61
GTC
1.75
GTG
4.07
GTA
1.11
7.54%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
2
TGA
1
ACT
 
GCT
1
 
 
 
 
5
TCT
0.3
TCC
1.08
TCG
1.09
TCA
0.19
AGT
0.27
AGC
2.05
 
 
 
 
4.98%
ArgACG
1
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
2
5
CGT
0.63
CGC
3.15
CGG
2.55
CGA
0.46
 
 
 
 
AGG
0.56
AGA
0.18
7.53%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
0.97
CTC
3.44
CTG
4.88
CTA
0.85
 
 
 
 
TTG
1.93
TTA
0.36
12.43%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
1.18
TTC
2.37
 
 
 
 
3.55%
AsnATT
 
GTT
2
 
 
 
 
2
AAT
0.39
AAC
1.92
 
 
 
 
2.31%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
2.4
AAA
1.14
3.54%
AspATC
 
GTC
1
 
 
 
 
1
GAT
1.29
GAC
2.7
 
 
 
 
3.99%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
5.02
GAA
1.9
6.92%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.42
CAC
1.55
 
 
 
 
1.97%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
2.77
CAA
1.11
3.88%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
0.64
ATC
3.1
 
 
ATA
0.25
3.99%
fMet/Met 
 
 
 
CAT
2/1
 
 
3
 
 
 
 
ATG
1.74
 
 
1.74%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0.7
TAC
2.22
 
 
 
 
2.92%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.15
TAG
0.11
TAA
0.09
0.35%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.1
TGC
0.45
 
 
 
 
0.55%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.66
 
 
1.66%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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