tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 45
Selenocysteine tRNAs (TCA) 1
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 1
Total tRNAs 47
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 5120
Number of Codons: 1617771

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
0.37
GCC
7.05
GCG
5.35
GCA
0.6
13.37%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
0.96
GGC
5.38
GGG
1.85
GGA
0.64
8.83%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.13
CCC
2.02
CCG
3.67
CCA
0.22
6.04%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.15
ACC
3.93
ACG
1.49
ACA
0.21
5.78%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
0.32
GTC
3.54
GTG
4.55
GTA
0.16
8.57%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0
TCC
1.26
TCG
2.02
TCA
0.17
AGT
0.18
AGC
1.48
 
 
 
 
5.11%
ArgACG
1
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
4
CGT
0.42
CGC
3.58
CGG
2.94
CGA
0.38
 
 
 
 
AGG
0.2
AGA
0.06
7.58%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
0.25
CTC
1.81
CTG
6.5
CTA
0.1
 
 
 
 
TTG
1.1
TTA
0.05
9.81%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
0.26
TTC
2.72
 
 
 
 
2.98%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
0.27
AAC
1.93
 
 
 
 
2.2%
Lys 
 
 
 
CTT
1
TTT
2
3
 
 
 
 
AAG
1.78
AAA
0.41
2.19%
AspATC
 
GTC
1
 
 
 
 
1
GAT
0.94
GAC
5.26
 
 
 
 
6.2%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
3.72
GAA
1.39
5.11%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.39
CAC
1.88
 
 
 
 
2.27%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
2.57
CAA
0.51
3.08%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
0.28
ATC
3.75
 
 
ATA
0.07
4.1%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
1.86
 
 
1.86%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0.3
TAC
1.76
 
 
 
 
2.06%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.2
TAG
0.09
TAA
0.03
0.32%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.1
TGC
0.74
 
 
 
 
0.84%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.52
 
 
1.52%
SelCys 
 
 
 
 
 
TCA
1
1
 
 
 
 
 
 
 
 
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