tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 31
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 1
tRNAs with undetermined or unknown isotypes 1
Predicted pseudogenes 0
Total tRNAs 33
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 739
Number of Codons: 276727

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
 
CGC
 
TGC
1
1
GCT
3.06
GCC
0.37
GCG
0.53
GCA
1.81
5.77%
GlyACC
 
GCC
1
CCC
 
TCC
1
2
GGT
2.46
GGC
0.32
GGG
0.74
GGA
1.1
4.62%
ProAGG
 
GGG
 
CGG
 
TGG
1
1
CCT
1.16
CCC
0.23
CCG
0.27
CCA
1.57
3.23%
ThrAGT
 
GGT
1
CGT
 
TGT
1
2
ACT
2.44
ACC
0.8
ACG
0.6
ACA
1.8
5.64%
ValAAC
 
GAC
 
CAC
 
TAC
1
1
GTT
3.36
GTC
0.38
GTG
0.82
GTA
1.39
5.95%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
 
CGA
 
TGA
1
ACT
 
GCT
1
 
 
 
 
2
TCT
1.5
TCC
0.11
TCG
0.36
TCA
2.45
AGT
1.93
AGC
0.6
 
 
 
 
6.95%
ArgACG
 
GCG
2
CCG
 
TCG
1
 
 
 
 
CCT
 
TCT
1
4
CGT
0.71
CGC
0.22
CGG
0.18
CGA
0.33
 
 
 
 
AGG
0.15
AGA
1.64
3.23%
LeuAAG
 
GAG
 
CAG
 
TAG
1
 
 
 
 
CAA
1
TAA
1
3
CTT
1.3
CTC
0.11
CTG
0.34
CTA
1.68
 
 
 
 
TTG
0.84
TTA
5.61
9.88%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
3.74
TTC
1.25
 
 
 
 
4.99%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
4.98
AAC
2.87
 
 
 
 
7.85%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
2.44
AAA
6.44
8.88%
AspATC
 
GTC
1
 
 
 
 
1
GAT
4.78
GAC
0.88
 
 
 
 
5.66%
Glu 
 
 
 
CTC
 
TTC
1
1
 
 
 
 
GAG
1.05
GAA
4.56
5.61%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.81
CAC
0.67
 
 
 
 
1.48%
Gln 
 
 
 
CTG
 
TTG
1
1
 
 
 
 
CAG
0.66
CAA
3.61
4.27%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
4.54
ATC
3.09
 
 
ATA
0.71
8.34%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
1.62
 
 
1.62%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
3
TAC
1.21
 
 
 
 
4.21%
Supres 
 
TCA
1
CTA
 
TTA
 
1
Stop 
 
TGA
0.67
TAG
0.05
TAA
0.23
0.95%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.4
TGC
0.09
 
 
 
 
0.49%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0.2
 
 
0.2%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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