tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 29
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 1
tRNAs with undetermined or unknown isotypes 1
Predicted pseudogenes 0
Total tRNAs 31
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 832
Number of Codons: 314670

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
 
CGC
 
TGC
1
1
GCT
2.73
GCC
0.11
GCG
0.07
GCA
1.63
4.54%
GlyACC
 
GCC
 
CCC
 
TCC
1
1
GGT
1.88
GGC
0.09
GGG
0.2
GGA
2.06
4.23%
ProAGG
 
GGG
 
CGG
 
TGG
1
1
CCT
0.96
CCC
0.03
CCG
0.05
CCA
1.45
2.49%
ThrAGT
1
GGT
 
CGT
 
TGT
1
2
ACT
3.35
ACC
0.11
ACG
0.04
ACA
1.9
5.4%
ValAAC
 
GAC
 
CAC
 
TAC
1
1
GTT
3.48
GTC
0.11
GTG
0.21
GTA
1.51
5.31%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
 
CGA
 
TGA
1
ACT
 
GCT
1
 
 
 
 
2
TCT
1.6
TCC
0.03
TCG
0.05
TCA
2.46
AGT
2.23
AGC
0.23
 
 
 
 
6.6%
ArgACG
1
GCG
 
CCG
 
TCG
 
 
 
 
 
CCT
 
TCT
1
2
CGT
0.32
CGC
0.04
CGG
0.01
CGA
0.05
 
 
 
 
AGG
0.06
AGA
2.06
2.54%
LeuAAG
 
GAG
 
CAG
 
TAG
1
 
 
 
 
CAA
1
TAA
1
3
CTT
0.83
CTC
0.01
CTG
0.06
CTA
1.25
 
 
 
 
TTG
0.36
TTA
7.47
9.98%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
4.68
TTC
0.3
 
 
 
 
4.98%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
6.99
AAC
1.38
 
 
 
 
8.37%
Lys 
 
 
 
CTT
1
TTT
2
3
 
 
 
 
AAG
0.87
AAA
10.04
10.91%
AspATC
 
GTC
1
 
 
 
 
1
GAT
5.32
GAC
0.46
 
 
 
 
5.78%
Glu 
 
 
 
CTC
 
TTC
1
1
 
 
 
 
GAG
0.41
GAA
5.77
6.18%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.06
CAC
0.27
 
 
 
 
1.33%
Gln 
 
 
 
CTG
 
TTG
1
1
 
 
 
 
CAG
0.18
CAA
3.66
3.84%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
7.06
ATC
0.58
 
 
ATA
2.24
9.88%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
1.63
 
 
1.63%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
3.7
TAC
0.39
 
 
 
 
4.09%
Supres 
 
TCA
1
CTA
 
TTA
 
1
Stop 
 
TGA
0.96
TAG
0.07
TAA
0.2
1.23%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.5
TGC
0.06
 
 
 
 
0.56%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0.05
 
 
0.05%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
-