tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 45
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 1
Total tRNAs 46
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 3750
Number of Codons: 1165546

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
1.07
GCC
5.87
GCG
4.83
GCA
1.3
13.07%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
1.71
GGC
4.4
GGG
1.73
GGA
0.95
8.79%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.34
CCC
1.7
CCG
3.18
CCA
0.62
5.84%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.37
ACC
3.49
ACG
1.57
ACA
0.46
5.89%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
0.81
GTC
3.37
GTG
4.08
GTA
0.49
8.75%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
2
TGA
1
ACT
 
GCT
1
 
 
 
 
5
TCT
0.2
TCC
1.16
TCG
1.94
TCA
0.36
AGT
0.35
AGC
1.42
 
 
 
 
5.43%
ArgACG
1
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
4
CGT
0.87
CGC
2.96
CGG
2.56
CGA
0.75
 
 
 
 
AGG
0.33
AGA
0.13
7.6%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
0.56
CTC
1.78
CTG
5.17
CTA
0.49
 
 
 
 
TTG
1.78
TTA
0.16
9.94%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
0.61
TTC
2.33
 
 
 
 
2.94%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
0.49
AAC
1.81
 
 
 
 
2.3%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
1.58
AAA
0.55
2.13%
AspATC
 
GTC
1
 
 
 
 
1
GAT
1.6
GAC
4.35
 
 
 
 
5.95%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
3.16
GAA
1.69
4.85%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.66
CAC
1.62
 
 
 
 
2.28%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
2.3
CAA
0.81
3.11%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
0.65
ATC
3.44
 
 
ATA
0.22
4.31%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
1.9
 
 
1.9%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0.6
TAC
1.53
 
 
 
 
2.13%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.18
TAG
0.09
TAA
0.05
0.32%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.2
TGC
0.68
 
 
 
 
0.88%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.51
 
 
1.51%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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