tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results (on host zam.soe.ucsc.edu)
Started: Fri Aug  4 11:20:40 PDT 2017

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Search Mode:                       Bacterial
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-bact.cm
                                   TRNAinf-bact-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         1
Seqs w/at least 1 hit:  1
Bases read:             4539435 (x2 for both strands)
Bases in tRNAs:         3715
tRNAs predicted:        48
Av. tRNA length:        77
Script CPU time:        0.56 s
Scan CPU time:          50.82 s
Scan speed:             178.6 Kbp/sec

First pass search(es) ended: Fri Aug  4 11:20:44 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     48
Infernal-confirmed tRNAs:     46
Bases scanned by Infernal:  4675
% seq scanned by Infernal:  0.1 %
Script CPU time:          0.29 s
Infernal CPU time:            28.61 s
Scan speed:               163.4 bp/sec

Infernal analysis of tRNAs ended: Fri Aug  4 11:21:15 PDT 2017

Overall scan speed: 113090.1 bp/sec