tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 45
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 1
Total tRNAs 46
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 4246
Number of Codons: 1310454

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
1.07
GCC
5.98
GCG
4.89
GCA
1.27
13.21%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
1.85
GGC
4.96
GGG
1.89
GGA
0.98
9.68%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.32
CCC
1.69
CCG
3.15
CCA
0.6
5.76%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.36
ACC
3.54
ACG
1.56
ACA
0.44
5.9%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
0.79
GTC
3.29
GTG
4.06
GTA
0.47
8.61%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
2
TGA
1
ACT
 
GCT
1
 
 
 
 
5
TCT
0.2
TCC
1.15
TCG
1.94
TCA
0.34
AGT
0.34
AGC
1.44
 
 
 
 
5.41%
ArgACG
1
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
4
CGT
0.84
CGC
2.86
CGG
2.48
CGA
0.71
 
 
 
 
AGG
0.31
AGA
0.12
7.32%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
0.54
CTC
1.74
CTG
5.1
CTA
0.47
 
 
 
 
TTG
1.8
TTA
0.16
9.81%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
0.62
TTC
2.36
 
 
 
 
2.98%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
0.52
AAC
1.99
 
 
 
 
2.51%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
1.52
AAA
0.53
2.05%
AspATC
 
GTC
1
 
 
 
 
1
GAT
1.57
GAC
4.26
 
 
 
 
5.83%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
3.09
GAA
1.63
4.72%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.64
CAC
1.59
 
 
 
 
2.23%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
2.28
CAA
0.8
3.08%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
0.65
ATC
3.44
 
 
ATA
0.21
4.3%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
1.84
 
 
1.84%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0.6
TAC
1.48
 
 
 
 
2.08%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.18
TAG
0.1
TAA
0.05
0.33%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.2
TGC
0.65
 
 
 
 
0.85%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.48
 
 
1.48%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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