tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 59
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 2
Total tRNAs 61
Intron Summary (tRNAs with introns: 1)
Supres TCA
1
SelCys TCA
1

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 2023
Number of Codons: 613460

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
 
TGC
5
6
GCT
0.93
GCC
4.21
GCG
2.97
GCA
1.98
10.09%
GlyACC
 
GCC
4
CCC
 
TCC
1
5
GGT
1.66
GGC
4.43
GGG
0.75
GGA
0.86
7.7%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.73
CCC
1.4
CCG
1.78
CCA
0.26
4.17%
ThrAGT
 
GGT
1
CGT
1
TGT
2
4
ACT
0.59
ACC
2.62
ACG
1.35
ACA
0.65
5.21%
ValAAC
 
GAC
1
CAC
 
TAC
2
3
GTT
1.61
GTC
2.3
GTG
1.81
GTA
0.98
6.7%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0.6
TCC
1.37
TCG
0.97
TCA
0.43
AGT
0.5
AGC
1.69
 
 
 
 
5.56%
ArgACG
2
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
5
CGT
1.15
CGC
2.83
CGG
0.67
CGA
0.28
 
 
 
 
AGG
0.36
AGA
0.26
5.55%
LeuAAG
 
GAG
1
CAG
2
TAG
1
 
 
 
 
CAA
1
TAA
1
6
CTT
0.96
CTC
1.37
CTG
3.51
CTA
0.21
 
 
 
 
TTG
3.05
TTA
0.73
9.83%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
2.01
TTC
2.04
 
 
 
 
4.05%
AsnATT
 
GTT
2
 
 
 
 
2
AAT
1.51
AAC
2.59
 
 
 
 
4.1%
Lys 
 
 
 
CTT
 
TTT
2
2
 
 
 
 
AAG
1.09
AAA
4.55
5.64%
AspATC
 
GTC
2
 
 
 
 
2
GAT
2.25
GAC
3.01
 
 
 
 
5.26%
Glu 
 
 
 
CTC
 
TTC
3
3
 
 
 
 
GAG
1.26
GAA
4.84
6.1%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.9
CAC
1.34
 
 
 
 
2.24%
Gln 
 
 
 
CTG
 
TTG
3
3
 
 
 
 
CAG
1.71
CAA
2.33
4.04%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
4
CAT
1
TAT
 
5
ATT
2.17
ATC
3.06
 
 
ATA
0.53
5.76%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
2.37
 
 
2.37%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
1.4
TAC
1.57
 
 
 
 
2.97%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.15
TAG
0.04
TAA
0.19
0.38%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.2
TGC
0.75
 
 
 
 
0.95%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.2
 
 
1.2%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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