tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 54
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 3
Total tRNAs 57
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 5539
Number of Codons: 1696206

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
3
CGC
1
TGC
1
5
GCT
0.35
GCC
7.31
GCG
3.7
GCA
0.28
11.64%
GlyACC
 
GCC
3
CCC
1
TCC
1
5
GGT
1.46
GGC
4.47
GGG
2.45
GGA
1.12
9.5%
ProAGG
 
GGG
2
CGG
1
TGG
1
4
CCT
0.31
CCC
3.02
CCG
2.66
CCA
0.17
6.16%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.1
ACC
4.25
ACG
1.37
ACA
0.18
5.9%
ValAAC
 
GAC
2
CAC
1
TAC
1
4
GTT
0.22
GTC
4.58
GTG
3.75
GTA
0.21
8.76%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0.1
TCC
2.42
TCG
1.48
TCA
0.14
AGT
0.18
AGC
1.17
 
 
 
 
5.49%
ArgACG
1
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
3
6
CGT
1.3
CGC
3.24
CGG
2.74
CGA
0.67
 
 
 
 
AGG
0.54
AGA
0.14
8.63%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
0.27
CTC
3.47
CTG
5.78
CTA
0.1
 
 
 
 
TTG
0.69
TTA
0.01
10.32%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
0.06
TTC
2.75
 
 
 
 
2.81%
AsnATT
 
GTT
2
 
 
 
 
2
AAT
0.07
AAC
1.66
 
 
 
 
1.73%
Lys 
 
 
 
CTT
2
TTT
1
3
 
 
 
 
AAG
1.47
AAA
0.13
1.6%
AspATC
 
GTC
2
 
 
 
 
2
GAT
0.65
GAC
5.57
 
 
 
 
6.22%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
5.66
GAA
1.33
6.99%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.27
CAC
2.06
 
 
 
 
2.33%
Gln 
 
 
 
CTG
1
TTG
 
1
 
 
 
 
CAG
1.94
CAA
0.19
2.13%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
0.06
ATC
3.36
 
 
ATA
0.04
3.46%
fMet/Met 
 
 
 
CAT
2/1
 
 
3
 
 
 
 
ATG
1.81
 
 
1.81%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0.1
TAC
1.77
 
 
 
 
1.87%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.26
TAG
0.06
TAA
0.01
0.33%
CysACA
 
GCA
2
 
 
 
 
2
TGT
0.1
TGC
0.57
 
 
 
 
0.67%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.48
 
 
1.48%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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