Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

Ala tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGGTGTGGCGCAGCTGGTAGCGCACCTGCATGGCATGCAGGGG...........GtCAGGGGTTCGAGTCCCCTCACCTCCA... tRNA-Ala-GGC-1-1 Sc: 76.0 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGGTGTGGCGCAGTTGGTAGCGCGTCTCGTTCGCAATGAGAAG...........GtCAGGGGTTCGAATCCCCTCACCTCCA... tRNA-Ala-CGC-1-1 Sc: 76.5 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCCTTGGCGCAATTGGTAGCGCACCTGCTTTGCAAGCAGGGG...........GtTAGGGGTTCGAGTCCCCTAGGCTCCA... tRNA-Ala-TGC-1-1 Sc: 80.7
Arg tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCTGTAGCTCAACGGAtA.GAGCATCTGACTACGGATCAGAAG...........GtTTGGGGTTCGAATCCCTACAGGCGCG... tRNA-Arg-ACG-1-1 Sc: 71.8 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCTCCGTAGCTCAGGGGAtA.GAGCACTGGTTTCCGGTACCAGGT...........GtCGCAGGTTCGAATCCTGCCGGAGGCG... tRNA-Arg-CCG-1-1 Sc: 70.4 >>>>>>>..>>>>.........<<<<...>>>.......<<<..................>>>>>.......<<<<<<<<<<<<.... GCCCCCGTAGCTCAGTGGAtA.GAGCAGCCGCCTCCTAAGCGAAAG...........GtCGTAGGTTCGACTCCTACCGGGGGCA... tRNA-Arg-CCT-1-1 Sc: 68.1 >>>>>>>..>>>>.........<<<<.>>>.>.......<.<<<................>>>>>.......<<<<<<<<<<<<.... GCCCCCGTAGCTCAATGGAtA.GAGCACTGTCCTTCTAAGTCAGCC...........GtTGCAGGTTCGAGTCCTGCCGGGGGCG... tRNA-Arg-TCT-1-1 Sc: 69.7
Asn tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TCCCCCGTAGCTCAACTGGCAGAGCATTCGACTGTTAATCGAAGG...........GtTACTGGTTCGAGTCCAGTCGGGGGAG... tRNA-Asn-GTT-1-1 Sc: 73.0
Asp tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCCCCGTAGCGCAGTTGGTtAGCGCGCCGCCCTGTCACGGCGGAG...........GcCGCGGGTTCGAGTCCCGTCGGGGTCG... tRNA-Asp-GTC-1-1 Sc: 82.4
Cys tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGTGGGTTGGCCGAGAGGCG.AGGCAACGGACTGCAAATCCGTGT...........ACACGGGTTCAAATCCCGTACCCACCT... tRNA-Cys-GCA-1-1 Sc: 67.2
Glu tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GCCCCCGTTGTGTAGCGGCctA.GCACGCCTGCCTCTCACGTAGGTA...........GCGCCGGTTCGAATCCGGTCGGGGGTA... tRNA-Glu-CTC-1-1 Sc: 63.9 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GCCCCCATCGTCTAGCGGCctA.GGACACCGCCCTTTCACGGCGGGT...........ACGCCGGTTCGAATCCGGTTGGGGGTA... tRNA-Glu-TTC-1-1 Sc: 62.6
Gln tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<....................>>>>>.......<<<<<.<<<<<<<.... TGGTCTATGGTGTAATTGGC..AGCACGACTGGTTCTGGTCCAGTTA...............G.TCTAGGTTCGAGTCCTAG.TAGACCAG... tRNA-Gln-CTG-1-1 Sc: 55.5 >>>>>>>..>>.>..........<.<<.>>>>>.......<<<<<....................>>>>>.......<<<<<.<<<<<<<.... TCCCCGGTTGGTCTGCCGGCagGGCCCGCCTGACTTTGAATCAGGA.CAAGc..........GaCGTAGGTTCGACTCCTAC.CCGGGGAG... tRNA-Gln-TTG-1-1 Sc: 51.5
Gly tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGACGTAGCTCAGTTGGTA.GAGCGCAACCTTGCCAAGGTTGAG...........GtCGCGAGTTCGAGCCTCGTCGTCCGCT... tRNA-Gly-GCC-1-1 Sc: 79.7 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGACGTAGCTCAGTTGGTA.GAGCGTCAGCTTCCCAAGCTGAAT...........GtCGCGAGTTCGAACCTCGTCGTCCGCTCCA tRNA-Gly-CCC-1-1 Sc: 87.0 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGATGTAGCTCAAT.GGTA.GAGCCTCAGTCTTCCAAACTGATT...........A.CGCGGGTTCGATTCCCGTCATCCCCT... tRNA-Gly-TCC-1-1 Sc: 77.3
His tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTGGGTATAGCTCAGCTGGTAGAGCGCCGCGTTGTGGTCGCGGAT...........GtCGCGGGTTCAAGTCCCGTTACTCACCCCA tRNA-His-GTG-1-1 Sc: 70.2
Ile tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCTATAGCTCAGACGGTtAGAGCACCACACTGATAATGTGGGG...........GtCAGAGGTTCAAGTCCTCTTAGGCCCA... tRNA-Ile-GAT-1-1 Sc: 76.6
Ile2 tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCGGTAGCTCAGTCGGTcAGAGCAGAGGACTCATAATCCTTGG...........GtCGTGGGTTCGAGCCCCACCCGCCCTA... tRNA-Ile2-CAT-1-1 Sc: 78.4
Leu tRNAs
>>>>>>>.................>>>.......................<<<.>>>>>.........................<<<<<..>>>>.............<<<<..>>>>>.......<<<<<..<<<<<<<.... GTCCGGGT...............GGCGG..AATTGGCaG..........ACGCGCTAGCTTGAG.................GT.GCTAGT.GCCC.GTATta......GGGCGTGGGGGTTCAAGTCCCCC..CTCGGACA... tRNA-Leu-GAG-1-1 Sc: 57.8 >>>.>>>.................>>>.......................<<<.>.>>>.........................<<<.<...>.>.............<.<...>>>>>.......<<<<<..<<<.<<<.... GGGTCTGTcggcgacgtgtcagt.GCGAgc.GCCGGG.A.ccgagaac.ACGCCACCCACTGACtgcacccggagaagacc...TGGCTCGGCGCT...........CGAGGACCGGGGTTCGATTCCCCG..CAGCTCCACCA tRNA-Leu-GAG-2-1 Sc: 23.5 >>>>>>>.................>>>.......................<<<.>>>>>.........................<<<<<..>>>>.............<<<<..>>>>>.......<<<<<..<<<<<<<.... GCGCGAGT...............GGCGG..AATAGGCaG..........ACGCGCACGGTTCAG.................GT.CCGTGT.GTCC.GAAA........GGACGTGGGGGTTCAACTCCCCC..CTCGCGCA... tRNA-Leu-CAG-1-1 Sc: 62.6 >>>>>>>.................>>>.......................<<<.>>>>>.........................<<<<<..>>>>.............<<<<..>>>>>.......<<<<<..<<<<<<<.... GCCGGAGT...............GGTGG..AACTGGCaG..........ACACGCGGCACTTAG.................GA.TGCCGT.GCCTT...........CGGGTGTGCGGGTTCGAGTCCCGC..CTCCGGCA... tRNA-Leu-TAG-1-1 Sc: 67.0 >>>>>>>.................>>>.......................<<<.>>>>>.........................<<<<<..>>>>.............<<<<..>>>>>.......<<<<<..<<<<<<<.... GCCGGGTT...............GGCGG..AAC.GGTaT..........ACGCGGCGCTCTCAA.................AA.AGCGTT.GTCC.GAAA........GGGCATGTGGGTTCGAATCCCAC..ACTCGGCA... tRNA-Leu-CAA-1-1 Sc: 67.0 >>>>>>>.................>>>.......................<<<.>>>>>.........................<<<<<.........................>>>>>.......<<<<<..<<<<<<<.... GCCCCCGT...............ATCCC..AACCGGTaG..........AGGAAGCCGCCTTAA.................AA.GCGGTC......CGA.............GTGTGGGTTCGACTCCCAC..CGGGGGCA... tRNA-Leu-TAA-1-1 Sc: 59.8
Lys tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCATTAGCTCAATTGGCAGAGCAGCTGACTCTTAATCAGCGG...........GtTCGGGGTTCGAGTCCCTGATGGCGTA... tRNA-Lys-CTT-1-1 Sc: 73.7 >>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GGGCCGTTAGCTCAGTTGGTAGAGCACCGGACTTTTAATCCGAGT...........GtCGCGGGTTCGAGCCCCGCACGGCCTACCA tRNA-Lys-TTT-1-1 Sc: 85.1
Met tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCGGGATAGCTCAGACGGTtAGAGCGCACGACTCATAATCGTGAG...........GtCACGGGTTCGATCCCCGTTCCCGCTA... tRNA-Met-CAT-1-1 Sc: 72.8
fMet tRNAs
.>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGGTGGAGCAGCTcGGTAGCTCGCTGGGCTCATAACCCAGAG...........GtCGCAGGTTCAAATCCTGCCCCCGCTA... tRNA-fMet-CAT-1-1 Sc: 76.0
Phe tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCAGGTAGCTCAGTTGGTaCGAGCGATCGCCTGAAAAGTGATAG...........GtCGGCGGTTCGACCCCGCCCCTGCCCA... tRNA-Phe-GAA-1-1 Sc: 73.1
Pro tRNAs
>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGCTGTAGCGCAGCTtGGT.A.GCGCACCTGACTGGGGGTCAGGGG...........GtCGCAGGTTCAAATCCTGTCAGCCCGA... tRNA-Pro-GGG-1-1 Sc: 74.2 >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGCTGTGGCGCAGCTtGGT.A.GCGCGCCTCGTTCGGGACGAGGAG...........GcCGCAGGTTCAAATCCTGTCAGCCCGA... tRNA-Pro-CGG-1-1 Sc: 76.3 >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGGCGTAGCGTAGT..GGCtA.GCGCGCCTGCTTTGGGAGCAGGAG...........AcCGCAGGTTCGAGTCCTGTCGCCCCGA... tRNA-Pro-TGG-1-1 Sc: 76.3
Ser tRNAs
>>>>>>>..>>>..............<<<.>>>>>.......<<<<<..>>.>.........<.<<...>>>>>.......<<<<<..<<<<<<<.... GGAGGTATCGCCTAGT..GGCctA.TGGCGCTCGCTTGGAAAGCGGGTTGGGT..TAAC...AGCCCtCGGGGGTTCGAATCCCCC..TACCTCCG... tRNA-Ser-GGA-1-1 Sc: 64.0 >>>>>>>..>>>..............<<<.>>>>>.......<<<<<..>>>>>>.....<<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGTGGCGTGTCCGAGC..GGCctA.AGGAGAACGCCTCGAAAGCGTTT.GTGGGTGCAA.GCCCAC..CGAGGGTTCAAATCCCTC..CGCCACCGCCA tRNA-Ser-CGA-1-1 Sc: 78.4 >>>>>>>..>>>>............<<<<.>>>>>.......<<<<<..>>>>>.......<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAGGGGTGCCGGAGT..GGCcgA.TCGGAGCCGCCTTGAAAGCGGCC.GTAGG.GAGA..CCTAC..CGCGGGTTCGAATCCCGC..CCCCTCTG... tRNA-Ser-TGA-1-1 Sc: 69.9 >>>>>>>..>>>..............<<<.>>>>>.......<<<<<..>>>>>.......<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAGGCGTCGCCTAGTCtGGTctA.TGGCGCCCGCCTGCTAAGCGGGTTTGGGGCTACA.ACCCCAT.CGAGGGTTCAAATCCCTC..CGCCTCCG... tRNA-Ser-GCT-1-1 Sc: 71.3
Thr tRNAs
>>>>>>>.............>>>>.............................................<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCCTTTA...........GCTCAGTCGGC.....................................AGAGCGTCTCCATGGTAAGGAGAAG...........GtCTACGGTTCGATTCCGTAAAGGGGCT... tRNA-Thr-GGT-1-1 Sc: 69.8 >>>>>>>.............>>>>.............................................<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGCCTTA...........GCTCAGTCGGT.....................................AGAGCGAATCACTCGTAATGATTAG...........GtCGTCGGTTCGATTCCGACAGGCGGCTCCA tRNA-Thr-CGT-1-1 Sc: 85.8 ..>>>...............>>.................................................<<.>>>>>.......<<<<<................>>>>>.......<<<<<..<<<...... TGCGCAGTGggcagattgctGCCTAGATTGCtgccctgagaccagttctcccggattctgagcgtgat.TCGCGAATCACTCGTAATGATTAG...........GtCGTCGGTTCGATTCCGACAGGCG...... tRNA-Thr-CGT-2-1 Sc: 28.7 >>>>>>>.............>>>>.............................................<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGGTGTA...........GCTCAGTTGGT.....................................AGAGCGTCTTACTTGTAATAAGAGG...........GtCGCGGGTTCAAATCCTGTCACCGGCTCCA tRNA-Thr-TGT-1-1 Sc: 84.3
Trp tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGGCACTAGCTCAACTGGCAGAGCATCGGTCTCCAAAACCGAAG...........GtTGGGGGTTCAAGTCCCTCGTGCCCTG... tRNA-Trp-CCA-1-1 Sc: 75.2
Tyr tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GGCAGGTTGCCCGAGCGGCcaA.AGGGAGCTGACTGTAAATCAGCCGGCGTA.....GCCTaCAGTGGTTCGAATCCACT.ACCTGCCA... tRNA-Tyr-GTA-1-1 Sc: 66.7
Val tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGATTGGCGCAGCGGTA.GCGCGCTTCCTTGACACGGAAGAG...........GtCACTGGTTCAAACCCAGTATCGCCCACCA tRNA-Val-GAC-1-1 Sc: 79.6 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGATTGGCGCAGTGGTA.GCGCGCTTCGTTCACACCGAAGAG...........GtCACTGGTTCGAACCCAGTATCGCCCA... tRNA-Val-CAC-1-1 Sc: 74.3 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGTATAGCTCAGCGGTA.GAGCACCTCGCTTACAACGAGGTG...........GtCACAGGTTCGATCCCTGTTGCGCCCA... tRNA-Val-TAC-1-1 Sc: 78.7
SeC tRNAs
>>>>>>>....>>.>>>....<<<.<<..>>>>.......<<<<....>>>>>>>>....<<<<<<<<.>>>>>.......<<<<<..<<<<<<<.... GGAGGCGTATgGGTTCCTGGTGGGCCCCCCGGTCTTCAAAACCGA.GGAGGCCGAGCAG.CTCGGCCTGGCGGGTTCGATTCCCGT.CCGCCTCCgcca tRNA-SeC-TCA-1-1 Sc: 116.6
Sup tRNAs