tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 46
Selenocysteine tRNAs (TCA) 1
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 1
Total tRNAs 48
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 5417
Number of Codons: 1715150

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
0.27
GCC
7.64
GCG
5.58
GCA
0.34
13.83%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
0.73
GGC
6.69
GGG
1.64
GGA
0.37
9.43%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.11
CCC
2.31
CCG
3.32
CCA
0.08
5.82%
ThrAGT
 
GGT
1
CGT
2
TGT
1
4
ACT
0.06
ACC
4.07
ACG
2.03
ACA
0.05
6.21%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
0.07
GTC
6.33
GTG
3.16
GTA
0.07
9.63%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0
TCC
1.36
TCG
1.87
TCA
0.05
AGT
0.06
AGC
1.52
 
 
 
 
4.86%
ArgACG
1
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
4
CGT
0.35
CGC
4.09
CGG
2.86
CGA
0.19
 
 
 
 
AGG
0.11
AGA
0.01
7.61%
LeuAAG
 
GAG
2
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
6
CTT
0.07
CTC
5.35
CTG
4.78
CTA
0.02
 
 
 
 
TTG
0.08
TTA
0
10.3%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
0.01
TTC
2.64
 
 
 
 
2.65%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
0.04
AAC
1.67
 
 
 
 
1.71%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
1.93
AAA
0.01
1.94%
AspATC
 
GTC
1
 
 
 
 
1
GAT
0.2
GAC
6.28
 
 
 
 
6.48%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
5.23
GAA
0.12
5.35%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.06
CAC
2.05
 
 
 
 
2.11%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
2.6
CAA
0.04
2.64%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
0.02
ATC
3.36
 
 
ATA
0
3.38%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
1.52
 
 
1.52%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0
TAC
1.93
 
 
 
 
1.93%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.26
TAG
0.05
TAA
0
0.31%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0
TGC
0.7
 
 
 
 
0.7%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.5
 
 
1.5%
SelCys 
 
 
 
 
 
TCA
1
1
 
 
 
 
 
 
 
 
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