Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

Ala tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAG...........GtCGACGGTTCGATCCCGTCTAGCTCCACCA tRNA-Ala-GGC-1-1 Sc: 77.4 GGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAG...........GtCAGCGGTTCGATCCCGCTTAGCTCCACCA tRNA-Ala-GGC-2-1 Sc: 76.3 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAACGGTTCGATCCCGTTTGGCTCCACCA tRNA-Ala-TGC-1-1 Sc: 82.7 GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAACGGTTCGATCCCGTTTGGCTCCACCA tRNA-Ala-TGC-1-2 Sc: 82.7 GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAACGGTTCGATCCCGTTTGGCTCCACCA tRNA-Ala-TGC-1-3 Sc: 82.7 GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAACGGTTCGATCCCGTTTGGCTCCACCA tRNA-Ala-TGC-1-4 Sc: 82.7 GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAACGGTTCGATCCCGTTTGGCTCCACCA tRNA-Ala-TGC-1-5 Sc: 82.7 GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAACGGTTCGATCCCGTTTGGCTCCACCA tRNA-Ala-TGC-1-6 Sc: 82.7 >>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GGGGCCATAGCTCAGCTGGGAGAGCG.CTGCCTTGCACGCAGGAG...........GtCAACGGTTCGATCCCGTTTGGCTCCACCA tRNA-Ala-TGC-2-1 Sc: 68.4
Arg tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCACTCGTAGCTCAGCTGGAtAGAGTACTCGGCTACGAACCGAGCG...........GtCACAGGTTCGAATCCTGTCGAGTGCACCA tRNA-Arg-ACG-1-1 Sc: 84.0 GCACTCGTAGCTCAGCTGGAtAGAGTACTCGGCTACGAACCGAGCG...........GtCACAGGTTCGAATCCTGTCGAGTGCACCA tRNA-Arg-ACG-1-2 Sc: 84.0 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCACCAGTAGCTCAGCTGGAtAGAGTACTGCCCTCCGAAGGCAGGG...........GtCGTGGGTTCGAATCCCGCCTGGTGCACCA tRNA-Arg-CCG-1-1 Sc: 87.9 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTCTCAGTAGCTCAATTGGAtAGAGCATCCCCCTCCTAAGGGGAAG...........GtTGGCAGTTCGAACCTGCCCTGGGACACCA tRNA-Arg-CCT-1-1 Sc: 72.8 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCCGTAGCTCAGCTGGAtAGAGCATCCGCCTTCTAAGCGGATG...........GtCGCAGGTTCGAGTCCTGCCGGGTGCGCCA tRNA-Arg-TCT-1-1 Sc: 89.3
Asn tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TCCGTGATAGCTCAGTCGGTAGAGCAAATGACTGTTAATCATTGG...........GtCCCAGGTTCGAGTCCTGGTCACGGAGCCA tRNA-Asn-GTT-1-1 Sc: 80.6 TCCGCGATAGCTCAGTTGGTAGAGCAAGTGACTGTTAATCACTGG...........GtCCCTGGTTCGAGTCCAGGTCGTGGAGCCA tRNA-Asn-GTT-2-1 Sc: 77.4
Asp tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTGCGCCA tRNA-Asp-GTC-1-1 Sc: 90.7 GCAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTGCGCCA tRNA-Asp-GTC-1-2 Sc: 90.7 GCAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTGCGCCA tRNA-Asp-GTC-1-3 Sc: 90.7 GCAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTGCGCCA tRNA-Asp-GTC-1-4 Sc: 90.7
Cys tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>.>>>.......<<<.<<<<<<<<.... GGCCGAGTAGCAAAATGGTT.ATGCAGCGGATTGCAAATCCGCCT...........ACGCCGGTTCGATTCCGACCTCGGCCTCCA tRNA-Cys-GCA-1-1 Sc: 65.3
Gln tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGGGCGTCGCCAAGCGGTA.AGGCAGCAGGTTTTGATCCTGCCA...........TgCGTTGGTTCGAATCCAGCCGCCCCTGCCA tRNA-Gln-TTG-1-1 Sc: 69.7 AGGGGCGTCGCCAAGCGGTA.AGGCAGCAGGTTTTGATCCTGCCA...........TgCGTTGGTTCGAATCCAGCCGCCCCTGCCA tRNA-Gln-TTG-1-2 Sc: 69.7
Glu tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GTCCCCTTCGTCTAGTGGCctA.GGACACCGCCCTTTCACGGCGGTA...........ACAGGGGTTCGAGTCCCCTAGGGGACGCCA tRNA-Glu-TTC-1-1 Sc: 68.9 GTCCCCTTCGTCTAGTGGCctA.GGACACCGCCCTTTCACGGCGGTA...........ACAGGGGTTCGAGTCCCCTAGGGGACGCCA tRNA-Glu-TTC-1-2 Sc: 68.9 GTCCCCTTCGTCTAGTGGCctA.GGACACCGCCCTTTCACGGCGGTA...........ACAGGGGTTCGAGTCCCCTAGGGGACGCCA tRNA-Glu-TTC-1-3 Sc: 68.9 GTCCCCTTCGTCTAGTGGCctA.GGACACCGCCCTTTCACGGCGGTA...........ACAGGGGTTCGAGTCCCCTAGGGGACGCCA tRNA-Glu-TTC-1-4 Sc: 68.9
Gly tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGAATAGCTCAGTTGGTA.GAGCACGACCTTGCCAAGGTCGGG...........GtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA tRNA-Gly-GCC-1-1 Sc: 88.4 GCGGGAATAGCTCAGTTGGTA.GAGCACGACCTTGCCAAGGTCGGG...........GtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA tRNA-Gly-GCC-1-2 Sc: 88.4 GCGGGAATAGCTCAGTTGGTA.GAGCACGACCTTGCCAAGGTCGGG...........GtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA tRNA-Gly-GCC-1-3 Sc: 88.4 >>>>>>>..>>>...........<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GCGGGTGTCGTATAAT.GGCA.TTACTCCAGCTTCCCAAGCTGATA...........A.CGAGGGTTCGATTCCCTTCACCCGCTCCA tRNA-Gly-CCC-1-1 Sc: 64.1 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGTATAGTTTAGT.GGTA.GAACCTCAGCCTTCCAAGCTGATG...........A.TGCGGGTTCGATTCCCGCTACCCGCTCCA tRNA-Gly-TCC-1-1 Sc: 83.2
His tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTGGGCGTAGCTCAGTTGGTAGAGCACGGGATTGTGACTCCCGTT...........GtCGTGGGTTCGATCCCCATCGTCCACCCCA tRNA-His-GTG-1-1 Sc: 73.6 GTGGGCGTAGCTCAGTTGGTAGAGCACGGGATTGTGACTCCCGTT...........GtCGTGGGTTCGATCCCCATCGTCCACCCCA tRNA-His-GTG-1-2 Sc: 73.6
Ile tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTCTGTAGCTCAGTTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGCAGTTCGAATCTGCCCAGACCCACCA tRNA-Ile-GAT-1-1 Sc: 88.9 GGGTCTGTAGCTCAGTTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGCAGTTCGAATCTGCCCAGACCCACCA tRNA-Ile-GAT-1-2 Sc: 88.9 GGGTCTGTAGCTCAGTTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGCAGTTCGAATCTGCCCAGACCCACCA tRNA-Ile-GAT-1-3 Sc: 88.9 GGGTCTGTAGCTCAGTTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGCAGTTCGAATCTGCCCAGACCCACCA tRNA-Ile-GAT-1-4 Sc: 88.9 GGGTCTGTAGCTCAGTTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGCAGTTCGAATCTGCCCAGACCCACCA tRNA-Ile-GAT-1-5 Sc: 88.9 GGGTCTGTAGCTCAGTTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGCAGTTCGAATCTGCCCAGACCCACCA tRNA-Ile-GAT-1-6 Sc: 88.9 GGGTCTGTAGCTCAGTTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGCAGTTCGAATCTGCCCAGACCCACCA tRNA-Ile-GAT-1-7 Sc: 88.9
Leu tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>.............<<...>>>>>.......<<<<<.<<<<<<<.... GCCGAGGTGGTGGAATTGGTaGACACGCAACCTTGAGGTGGTTGTGCCC..ATAG.......GGTGTAGGGGTTCGAGTCCCCT.TCTCGGTACCA tRNA-Leu-GAG-1-1 Sc: 60.3 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>...........<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCCAGATGGTGAAATTGGTaGACACGCCAGCTTCAGGTGCTGGT.GACC.GCAA......GGTCGTGGAAGTTCGAGTCTTCT.TCTGGGCACCA tRNA-Leu-CAG-1-1 Sc: 72.2 GCCCAGATGGTGAAATTGGTaGACACGCCAGCTTCAGGTGCTGGT.GACC.TTAC......GGTCGTGGAAGTTCGAGTCTTCT.TCTGGGCACCA tRNA-Leu-CAG-2-1 Sc: 70.1 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.>.........<.<<<..>>>>>.......<<<<<.<<<<<<<.... GCGGATGTGGTGGAATTGGTaGACACACTGGATTTAGGTTCCAGC.GCCGC.........GAGGCGTAAGAGTTCGAGTCTCTT.CATCCGCACCA tRNA-Leu-TAG-1-1 Sc: 70.1 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.............<<<..>>>>>.......<<<<<.<<<<<<<.... GCCCTGATGGCGGAATTGGTaGACGCGGCGGATTCAAAATCCGTT.TTC..GAAA.......GGAGTGGGAGTTCGAGTCTCCC.TCGGGGCACCA tRNA-Leu-CAA-1-1 Sc: 70.8 >>>>>>>..>>>...........<<<..>>>>.......<<<<...>>>>...........<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCCGAATGGCGAAACTGGTaGACGCATGGGACTTAAAATCCCCC.GCTC.GTAA......GGGCGTGCCGGTTCGATTCCGGC.TTCGGGCACCA tRNA-Leu-TAA-1-1 Sc: 74.6
Lys tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>.>>.......<<.<<<<<<<<<.... GGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTG...........GtCGTAGGTTCGAATCCCACACGACCCACCA tRNA-Lys-TTT-1-1 Sc: 86.5 GGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTG...........GtCGTAGGTTCGAATCCCACACGACCCACCA tRNA-Lys-TTT-1-2 Sc: 86.5
Met/Ile2 tRNAs
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGGTGGAGCAGTCtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTCGGTTCAAATCCGGCCCCCGCAACCA tRNA-fMet-CAT-1-1 Sc: 78.4 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCTACATAGCTCAGTT.GGTtAGAGCATAGCATTCATAATGCTGGG...........GtCCGGGGTTCAAGTCCCTGTGTAGCCACCA tRNA-Met-CAT-1-1 Sc: 77.5 .>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGATGGAGCAGTCtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTCGGTTCAAATCCGGCTCCCGCAACCA tRNA-fMet-CAT-2-1 Sc: 76.7 CGCGGGATGGAGCAGTCtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTCGGTTCAAATCCGGCTCCCGCAACCA tRNA-fMet-CAT-2-2 Sc: 76.7 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCTATAGCTCAGTT.GGTtAGAGCAGAGGACTCATAATCCTTTG...........GtCCACGGTTCAAGTCCGTGTGGGCCCACCA tRNA-Ile2-CAT-1-1 Sc: 82.6
Phe tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCAGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGT...........GtCGGCGGTTCGATTCCGTCTCTGGGCACCA tRNA-Phe-GAA-1-1 Sc: 81.1
Pro tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGGCGTAGCGCAGTCcGGTAGCGCACTAGCATGGGGTGCTAGGG...........GtCGAGTGTTCGAATCACTCCGTCCCGACCA tRNA-Pro-GGG-1-1 Sc: 67.6 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>.>.......<.<<<<<<<<<<.... CGGGGTATAGCGCAGTCcGGTAGCGCGCCTGCTTTGGGAGCAGGAT...........GtCAGGAGTTCGAATCCCCTTACCCCGACCA tRNA-Pro-TGG-1-1 Sc: 73.4 CGGGGTATAGCGCAGTCcGGTAGCGCGCCTGCTTTGGGAGCAGGAT...........GtCAGGAGTTCGAATCCCCTTACCCCGACCA tRNA-Pro-TGG-1-2 Sc: 73.4
SeC tRNAs
>>>>>>..>..>>>>........<<<<..>>>>>.......<<<<<..>>>>>>>.....<<<<<<<..>>.>>.......<<.<<<.<<<<<<.... GGAAGGcaATCGCGCCCGGTG..GCGCGgCCGGGCTTCAAACCCGGTTGGGGACGGCATcCGTTCCCGGGCAGGTTCGACTCCGGCTgCCTTCCGCCA tRNA-SeC-TCA-1-1 Sc: 128.3
Ser tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGTGAAGTGTCCGAGTGGCttA.AGGAGCACGCCTGGAAAGTGTGT.ATACAGGAAA..CTGTAT..CGAGAGTTCGAATCTCTC..CTTCACCGCCA tRNA-Ser-GGA-1-1 Sc: 77.2 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>..........<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAGAGATGCCAGAGTGGCcgA.ATGGGACGGATTCGAAATCCGTTGTACCT.TCAC...CGGTAC.CTAGGGTTCGAATCCCTA..TCTCTCCGCCA tRNA-Ser-CGA-1-1 Sc: 71.0 >>>>>>>..>>>............<<<.>>>>>.......<<<<<...>>............<<....>>>.>.......<.<<<..<<<<<<<.... GGAGGTGTGGCCGAGTGGTttA.AGGCAACGGTCTTGAAAACCGTCGACT...GTAAc....AGGTcCATGAGTTCGAATCCCAT..CGCCTCCGCCA tRNA-Ser-TGA-1-1 Sc: 73.8 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>.>..........<.<<...>>>>>.......<<<<<..<<<<<<<.... GGAGAGCTGGCCGAGTGGCcgA.AGGCGCTCCCCTGCTAAGGGAGT.ACACC.TCAAa..AGGGTGtCGGGGGTTCGAATCCCCC..GTTCTCCGCCA tRNA-Ser-GCT-1-1 Sc: 75.0
Sup tRNAs
Thr tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCTCTTGTAGCTCAGTTGGTAGAGCACACCCTTGGTAAGGGTGAG...........GtCAGCGGTTCAAATCCGCTCAAGAGCTCCA tRNA-Thr-GGT-1-1 Sc: 80.7 >>>>>.>..>>>>........<<<<..>>>.........<<<.................>>>>>.......<<<<<<.<<<<<.... GCCCGTGTAGCTCAGCCGGTAGAGCAGCGCACTCGTAACGCGAAG...........GtCGCAGGTTCGATTCCTGTCTCGGGCACCA tRNA-Thr-CGT-1-1 Sc: 75.6 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGGTATAGCTCAGATGGTAGAGCAACTGACTTGTAATCAGTAG...........GtCCCGGGTTCGATTCCTGGTGCCGGCACCA tRNA-Thr-TGT-1-1 Sc: 85.7
Trp tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGTCAGTAGCTCAATTGGCAGAGCGACGGTCTCCAAAACCGTAG...........GtTGGGGGTTCGATTCCCTCCTGACCTGCCA tRNA-Trp-CCA-1-1 Sc: 86.5
Tyr tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GGAGGGGTTCCCGAGCGGCcaA.AGGGATCAGACTGTAAATCTGACGTCTAC.....GACTtCGAAGGTTCGAATCCTTC.CCCCTCCACCA tRNA-Tyr-GTA-1-1 Sc: 77.1
Val tRNAs
>>>>.>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<.<<<<.... AGGCACGTAGCTCAGTTGGTtAGAGCACCACCTTGACATGGTGGGG...........GtCGTTGGTTCGAGTCCAATCGCGCCTACCA tRNA-Val-GAC-1-1 Sc: 78.1 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTGATTAGCTCAGCTGGG.AGAGCGTCTGCCTTACAAGCAGAAT...........GtCGGCGGTTCGATCCCGTCATCACCCACCA tRNA-Val-TAC-1-1 Sc: 81.7 GGGTGATTAGCTCAGCTGGG.AGAGCGTCTGCCTTACAAGCAGAAT...........GtCGGCGGTTCGATCCCGTCATCACCCACCA tRNA-Val-TAC-1-2 Sc: 81.7 GGGTGATTAGCTCAGCTGGG.AGAGCGTCTGCCTTACAAGCAGAAT...........GtCGGCGGTTCGATCCCGTCATCACCCACCA tRNA-Val-TAC-1-3 Sc: 81.7