tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 71
Selenocysteine tRNAs (TCA) 1
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 72
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 5423
Number of Codons: 1799231

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
2
CGC
 
TGC
7
9
GCT
0.96
GCC
5.4
GCG
3.24
GCA
1.11
10.71%
GlyACC
 
GCC
3
CCC
1
TCC
1
5
GGT
1.78
GGC
4.66
GGG
1.06
GGA
0.39
7.89%
ProAGG
 
GGG
1
CGG
 
TGG
2
3
CCT
0.48
CCC
1
CCG
2.82
CCA
0.53
4.83%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.44
ACC
3.2
ACG
1.01
ACA
0.31
4.96%
ValAAC
 
GAC
1
CAC
 
TAC
3
4
GTT
0.71
GTC
2.44
GTG
3.47
GTA
0.52
7.14%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0.2
TCC
1.12
TCG
1.44
TCA
0.27
AGT
0.63
AGC
2.19
 
 
 
 
5.85%
ArgACG
2
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
5
CGT
1.33
CGC
3.21
CGG
1.02
CGA
0.36
 
 
 
 
AGG
0.19
AGA
0.1
6.21%
LeuAAG
 
GAG
1
CAG
2
TAG
1
 
 
 
 
CAA
1
TAA
1
6
CTT
0.53
CTC
1.82
CTG
6.89
CTA
0.16
 
 
 
 
TTG
2.05
TTA
0.14
11.59%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
0.9
TTC
2.85
 
 
 
 
3.75%
AsnATT
 
GTT
2
 
 
 
 
2
AAT
0.78
AAC
2.36
 
 
 
 
3.14%
Lys 
 
 
 
CTT
 
TTT
2
2
 
 
 
 
AAG
2.24
AAA
1.38
3.62%
AspATC
 
GTC
4
 
 
 
 
4
GAT
1.91
GAC
3.46
 
 
 
 
5.37%
Glu 
 
 
 
CTC
 
TTC
4
4
 
 
 
 
GAG
2.42
GAA
3.22
5.64%
HisATG
 
GTG
2
 
 
 
 
2
CAT
0.82
CAC
1.45
 
 
 
 
2.27%
Gln 
 
 
 
CTG
 
TTG
2
2
 
 
 
 
CAG
3.07
CAA
1.36
4.43%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
7
CAT
1
TAT
 
8
ATT
1.13
ATC
3.66
 
 
ATA
0.16
4.95%
fMet/Met 
 
 
 
CAT
3/1
 
 
4
 
 
 
 
ATG
2.39
 
 
2.39%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0.7
TAC
1.74
 
 
 
 
2.44%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.18
TAG
0.03
TAA
0.09
0.3%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.2
TGC
0.81
 
 
 
 
1.01%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.43
 
 
1.43%
SelCys 
 
 
 
 
 
TCA
1
1
 
 
 
 
 
 
 
 
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