Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

Ala tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAG...........GtCGACGGTTCGATCCCGTCTAGCTCCACCA tRNA-Ala-GGC-1-1 Sc: 77.4 GGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAG...........GtCGACGGTTCGATCCCGTCTAGCTCCACCA tRNA-Ala-GGC-1-2 Sc: 77.4 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGGAGTTCGATCCTCCTTGGCTCCACCA tRNA-Ala-TGC-1-1 Sc: 81.4 GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGGAGTTCGATCCTCCTTGGCTCCACCA tRNA-Ala-TGC-1-2 Sc: 81.4 GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGGAGTTCGATCCTCCTTGGCTCCACCA tRNA-Ala-TGC-1-3 Sc: 81.4 GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGGAGTTCGATCCTCCTTGGCTCCACCA tRNA-Ala-TGC-1-4 Sc: 81.4
Arg tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>........<<<<<<<<<<<<.... GCACTCATAGCTCAGCT.GGAtAGAGTACTCGGCTACGAACCGAGCG...........GtCGGAGGTTCGAAT.CCTCCTGAGTGCGCCA tRNA-Arg-ACG-1-1 Sc: 81.8 GCACTCATAGCTCAGCT.GGAtAGAGTACTCGGCTACGAACCGAGCG...........GtCGGAGGTTCGAAT.CCTCCTGAGTGCGCCA tRNA-Arg-ACG-1-2 Sc: 81.8 .>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>........<<<<<<<<<<<..... GGTTCGATAGCTCAGCCtGGT.AGAGCAACCATCCACGAAATGGTCT...........GtCGCGGGTTCGACT.CCCGCTCGAACGT... tRNA-Arg-ACG-2-1 Sc: 51.3 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>........<<<<<<<<<<<<.... GCACCTGTAGCTCAGCT.GGAtAGAGTATTGCCCTCCGAAGGCAAGG...........GtCGTGGGTTCGAAT.CCCGCCAGGTGCGCCA tRNA-Arg-CCG-1-1 Sc: 85.0 >>>>>>...>>>>..........<<<<.>>>>>.......<<<<<...................................<<<<<<.... GCATCCGTAGCTCAGCT.GGAtAGAGTACTGCCCTCCGAAGGCAGTG...........AtCA.....TCGAGT.TGAGAAGGGTGCA... tRNA-Arg-CCG-2-1 Sc: 21.8 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>........<<<<<<<<<<<<.... GTCCCGGTAGCTCAATT.GGAtAGAGCATCCCCCTCCTAAGGGGAAG...........GtTGGAGGTTCGACC.CCTCTCCGGGACGCCA tRNA-Arg-CCT-1-1 Sc: 76.2 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>........<<<<<<<<<<<<.... GCGCCCGTAGCTCAGCT.GGAtAGAGCATCCGCCTTCTAAGCGGATG...........GtCGCAGGTTCGAGT.CCTGCCGGGTGCGCCA tRNA-Arg-TCT-1-1 Sc: 89.3
Asn tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TCCGCGATAGCTCAGTCGGTA.GAGCAAATGACTGTTAATCATTGG...........GtCCCTGGTTCGAGTCCAGGTCGCGGAGCCA tRNA-Asn-GTT-1-1 Sc: 80.7 TCCGCGATAGCTCAGTCGGTA.GAGCAAATGACTGTTAATCATTGG...........GtCCCTGGTTCGAGTCCAGGTCGCGGAGCCA tRNA-Asn-GTT-1-2 Sc: 80.7 TGACGTGTAGCTCAGA.GGTA.GAGCGGTCGGCTGTTACCCGACTG...........GtCGATGGTTCGATCCCATCCGCGTCAGCCA tRNA-Asn-GTT-2-1 Sc: 71.7
Asp tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA tRNA-Asp-GTC-1-1 Sc: 91.2 GCAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTGCGCCA tRNA-Asp-GTC-2-1 Sc: 90.7 GCAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTGCGCCA tRNA-Asp-GTC-2-2 Sc: 90.7 GCAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTGCGCCA tRNA-Asp-GTC-2-3 Sc: 90.7
Cys tRNAs
>>>>>>>..>>>..........<<<..>>>>.......<<<<................>.>>>.......<<<.<<<<<<<<.... GGCTGAGTAGCAGAGTGGTT.ATGCACCGGATTGCAAATCCGTGA...........ACGCCGGTTCGATTCCGACCTCAGCCTCCA tRNA-Cys-GCA-1-1 Sc: 64.3
Gln tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGGGCGTCGCCAAGCGGTA.AGGCAGCAGGTTTTGATCCTGCCA...........TgCGTTGGTTCGAATCCAGCCGCCCCTGCCA tRNA-Gln-TTG-1-1 Sc: 69.7
Glu tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GTCCCCTTCGTCTAGTGGCctA.GGACACCGCCCTTTCACGGCGGTA...........ACAGGGGTTCGAGTCCCCTAGGGGACGCCA tRNA-Glu-TTC-1-1 Sc: 68.9 GTCCCCTTCGTCTAGTGGCctA.GGACACCGCCCTTTCACGGCGGTA...........ACAGGGGTTCGAGTCCCCTAGGGGACGCCA tRNA-Glu-TTC-1-2 Sc: 68.9 GTCCCCTTCGTCTAGTGGCctA.GGACACCGCCCTTTCACGGCGGTA...........ACAGGGGTTCGAGTCCCCTAGGGGACGCCA tRNA-Glu-TTC-1-3 Sc: 68.9
Gly tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGAATAGCTCAGTTGGTA.GAGCACGACCTTGCCAAGGTCGGG...........GtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA tRNA-Gly-GCC-1-1 Sc: 88.4 GCGGGAATAGCTCAGTTGGTA.GAGCACGACCTTGCCAAGGTCGGG...........GtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA tRNA-Gly-GCC-1-2 Sc: 88.4 GCGGGAATAGCTCAGTTGGTA.GAGCACGACCTTGCCAAGGTCGGG...........GtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA tRNA-Gly-GCC-1-3 Sc: 88.4 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGCGTCGTATAAT.GGCA.TTACCTGAGCTTCCCAAGCTCATG...........A.CGAGGGTTCGATTCCCTTCGCCCGCTCCA tRNA-Gly-CCC-1-1 Sc: 67.3 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGTATAGTTCAGT.GGTA.GAACCTCAGCCTTCCAAGCTGATG...........A.TGCGGGTTCGATTCCCGCTACCCGCTCCA tRNA-Gly-TCC-1-1 Sc: 86.0 >>>>>>>..>>>>.........<<<<.>>>.>.......<.<<<................>>>>>.......<<<<<<<<<<<<.... GCGGCTCTAGCTCAACTGGCA.GAGCGCTGTCCTTCCGAGTCAGAT...........GtTGCGGGTTCAAGTCCCGCGAGCCGCTCCA tRNA-Gly-TCC-2-1 Sc: 74.6
His tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTGGGCGTAGCTCAGTTGGTAGAGCACAGGATTGTGGCTCCTGGT...........GtCGTGGGTTCGATTCCCATCGTCCACCCCA tRNA-His-GTG-1-1 Sc: 74.5 GTGGGCGTAGCTCAGTTGGTAGAGCACAGGATTGTGGCTCCTGGT...........GtCGTGGGTTCGATTCCCATCGTCCACCCCA tRNA-His-GTG-1-2 Sc: 74.5
Ile tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTCTGTAGCTCAGTTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGCAGTTCGAATCTGCCCAGACCCACCA tRNA-Ile-GAT-1-1 Sc: 88.9 GGGTCTGTAGCTCAGTTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGCAGTTCGAATCTGCCCAGACCCACCA tRNA-Ile-GAT-1-2 Sc: 88.9 GGGTCTGTAGCTCAGTTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGCAGTTCGAATCTGCCCAGACCCACCA tRNA-Ile-GAT-1-3 Sc: 88.9 GGGTCTGTAGCTCAGTTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGCAGTTCGAATCTGCCCAGACCCACCA tRNA-Ile-GAT-1-4 Sc: 88.9
Leu tRNAs
>>>>>>>..>>>...........<<<.>>>>>.........<<<<<..>>>>............<<<<..>>>>>.......<<<<<..<<<<<<<.... GCCGAGGTGGTGGAATTGGTaGACACGCTACCTTGAGGT..GGTAGT.GGCC..ATA.......GGCTGTAGGGGTTCGAGTCCCCT..CCTCGGTACCA tRNA-Leu-GAG-1-1 Sc: 65.7 >>>>>>>..>>>...........<<<.>>>>>.........<<<<<..>>>>............<<<<..>>>>>.......<<<<<..<<<<<<<.... GCCCAGGTGGCGGAATTGGTaGACGCACTAGGTTCAGGT..CCTAGC.GGTG..GCAA......CACCGTGGAAGTTCGAGTCTTCT..CCTGGGCACCA tRNA-Leu-CAG-1-1 Sc: 72.7 GCCCAGGTGGCGGAATTGGTaGACGCACTAGGTTCAGGT..CCTAGC.GGTG..GCAA......CACCGTGGAAGTTCGAGTCTTCT..CCTGGGCACCA tRNA-Leu-CAG-1-2 Sc: 72.7 >>>>>>>..>>>...........<<<.>>>>>.........<<<<<..>>>..............<<<..>>>>>.......<<<<<..<<<<<<<.... GCGGACGTGGTGGAATTGGTaGACACACTGGATTTAGGT..TCCAGC.GCC...GCAA.......GGCGTGAGAGTTCGAGTCTCTC..CGTCCGCACCA tRNA-Leu-TAG-1-1 Sc: 75.5 >>>>>>>..>>>...........<<<.>>>>>.........<<<<<..>>>>.>........<.<<<<..>>>>>.......<<<<<..<<<<<<<.... GCCTCGGTGGCGGAATCGGTaGACGCGGCGGATTCAAAA..TCCGTT.TCTGGC........GACAGAGTGAGAGTTCGAGTCTCTC..CCGAGGCACCA tRNA-Leu-CAA-1-1 Sc: 73.8 >>>>>.....>>>.........<<<..>>>>>.........<<<<<........................>>>>>.......<<<<<....<<<<<.... CGTGTAA.GTCTCAGTAGGCcAGAGCTGCGGCC..CAAA..GCCGCGT....................GCGAGGGTTCGACTCCTTC..CCGTACGA... tRNA-Leu-CAA-2-1 Sc: 21.5 >>>>>>>..>>>...........<<<.>>>>>.........<<<<<..>>>>............<<<<..>>>>>.......<<<<<..<<<<<<<.... GCCCGGATGGCGAAATCGGTaGACGCAAGGGACTTAAAA..TCCCTC.GGGG..GTAA......CCCCGTGCCGGTTCGACCCCGGC..TCCGGGCACCA tRNA-Leu-TAA-1-1 Sc: 77.5
Lys tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTCGTTAGCTCAGTCGGTAGAGCAGTTGGCTTTTAACCAATTG...........GtCGTAGGTTCGAATCCTACACGACCCACCA tRNA-Lys-TTT-1-1 Sc: 90.9 GGGTCGTTAGCTCAGTCGGTAGAGCAGTTGGCTTTTAACCAATTG...........GtCGTAGGTTCGAATCCTACACGACCCACCA tRNA-Lys-TTT-1-2 Sc: 90.9
Met/Ile2 tRNAs
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGGTGGAGCAGTCtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTTGGTTCAAATCCAGCCCCCGCAACCA tRNA-fMet-CAT-1-1 Sc: 77.6 CGCGGGATGGAGCAGTCtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTTGGTTCAAATCCAGCTCCCGCAACCA tRNA-fMet-CAT-2-1 Sc: 75.9 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>.>>.......<<.<<<<<<<<<.... GGCTACATAGCTCAGTC.GGTtAGAGCGCAGCATTCATAATGCTGAT...........GtCCCAGGTTCAAGTCCCGGTGTAGCCACCA tRNA-Met-CAT-1-1 Sc: 73.4 >>>>>>>..>>>>..........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GGGCCTATAGCTCAGTT.GGTtAGAGCGCTCGACTCATAATCGATCG...........GtCGCAGGTTCAAGTCCTGCTGGGCCCACCA tRNA-Ile2-CAT-1-1 Sc: 84.0
Phe tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCAGGTAGCTCAGTTGGTAGAGCAGGGGATTGAAAATCCCCGT...........GtCGGCGGTTCGATTCCGTCCCTGGGCACCA tRNA-Phe-GAA-1-1 Sc: 84.7
Pro tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGGCGTAGCGCAGCCtGGTAGCGCACTTGCATGGGGTGCAAGGG...........GtCGAGTGTTCGAATCACTCCGTCCCGACCA tRNA-Pro-GGG-1-1 Sc: 67.3 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGAGCGTAGCGCAGCTtGGTAGCGCGTCTCGTTCGGGACGAGAAG...........GtCGCTGGTTCGAATCCAGTCGCTCCGACCA tRNA-Pro-CGG-1-1 Sc: 80.7 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGGTATAGCGCAGTCcGGTAGCGCGCCTGCTTTGGGAGCAGGAT...........GtCGGGAGTTCGAATCTCTCTACCCCGACCA tRNA-Pro-TGG-1-1 Sc: 79.6
SeC tRNAs
>>>>>>>...>............<...>>>>>.......<<<<<..>>>>>>>.....<<<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAAGGCAATCACGCCcGGTgGCGTGGCCGGACTTCAAATCCGGTGGGGGACGGCAGcCGTTCCTGGGTGGGTTCGACTCCCAC.tGCCTTCCGCCA tRNA-SeC-TCA-1-1 Sc: 135.0
Ser tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGTGAGGTGTCCGAGTGGTtgA.AGGAGCACGCCTGGAAAGTGTGT.ATACGGGAAA..CCGTAT..CGAGGGTTCGAATCCCTC..CCTCACCGCCA tRNA-Ser-GGA-1-1 Sc: 82.9 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>........<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAGAGATGCCGGAGTGGTcgA.ACGGGACGGATTCGAAATCCGTTGAGTCA.GCAA...TGGCTC.CTAGGGTTCAAATCCCTA..TCTCTCCGCCA tRNA-Ser-CGA-1-1 Sc: 77.3 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAGGTGTGGCCGAGTGGTttA.AGGCAACGGTCTTGAAAACCGTC.GAAGGGGAGA..CTCTTC..CGTGAGTTCGAATCTCAC..CGCCTCCGCCA tRNA-Ser-TGA-1-1 Sc: 89.0 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>.>..........<.<<...>>>>>.......<<<<<..<<<<<<<.... GGAGAGGTGGCCGAGTGGCcgA.AGGCGCTCCCCTGCTAAGGGAGT.ACACC.TCAAa..AGGGTGtCGGGGGTTCGAATCCCCC..CCTCTCCGCCA tRNA-Ser-GCT-1-1 Sc: 84.4
Sup tRNAs
Thr tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCTCATGTAGCTCAGTTGGTAGAGCACACCCTTGGTAAGGGTGAG...........GtCAGCGGTTCAAATCCGCTCATGAGCTCCA tRNA-Thr-GGT-1-1 Sc: 81.9 >>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GCCGGATTAGCTCAGTCGGTAGAGCAGCTCATTCGTAATGAGAAG...........GtCGGGGGTTCGATTCCTCTATCCGGCACCA tRNA-Thr-CGT-1-1 Sc: 82.7 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAG...........GtCCCGGGTTCGACTCCTGGTGCCGGCACCA tRNA-Thr-TGT-1-1 Sc: 87.0 >>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GCCGGTATGGCGCAACAGGGAGCGCTGCTGATTTGTAATCAGAGG...........GtTGCGGGTTCGACTCCTGCTGCCGGCACCA tRNA-Thr-TGT-2-1 Sc: 69.4
Trp tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGCCAGTAGCTCAATTGGCAGAGCGGCGGTCTCCAAAACCGCAG...........GtTGGGGGTTCGATTCCCTCCTGGCCTGCCA tRNA-Trp-CCA-1-1 Sc: 86.9
Tyr tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GGAGGGATTCCCGAGTGGCcaA.AGGGATCAGACTGTAAATCTGACGTCATA.....GACTtCGAAGGTTCGAATCCTTC.TCCCTCCACCA tRNA-Tyr-GTA-1-1 Sc: 76.6
Val tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGCACGTAGCTCAGTTGGTtAGAGCACCACCTTGACATGGTGGGG...........GtCGTTGGTTCGAATCCAATCGTGCCTACCA tRNA-Val-GAC-1-1 Sc: 84.6 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTGATTAGCTCAGCTGGG.AGAGCATCTGCCTTACAAGCAGAGG...........GtCGGCGGTTCGATCCCGTCATCACCCACCA tRNA-Val-TAC-1-1 Sc: 84.4 GGGTGATTAGCTCAGCTGGG.AGAGCATCTGCCTTACAAGCAGAGG...........GtCGGCGGTTCGATCCCGTCATCACCCACCA tRNA-Val-TAC-1-2 Sc: 84.4