tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 45
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 1
Predicted pseudogenes 1
Total tRNAs 47
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 2838
Number of Codons: 995697

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
0.6
GCC
5.89
GCG
3.28
GCA
0.66
10.43%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
0.88
GGC
4.3
GGG
1.43
GGA
0.96
7.57%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.38
CCC
2.08
CCG
3.14
CCA
0.27
5.87%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.13
ACC
2.04
ACG
2.82
ACA
0.26
5.25%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
0.45
GTC
2.34
GTG
4.46
GTA
0.5
7.75%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0.1
TCC
0.7
TCG
1.53
TCA
0.12
AGT
0.26
AGC
1.34
 
 
 
 
4.05%
ArgACG
1
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
4
CGT
1.05
CGC
4.29
CGG
2.99
CGA
0.57
 
 
 
 
AGG
0.13
AGA
0.09
9.12%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
0.8
CTC
2.29
CTG
7.68
CTA
0.19
 
 
 
 
TTG
0.73
TTA
0.09
11.78%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
1.24
TTC
2.45
 
 
 
 
3.69%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
0.47
AAC
1.8
 
 
 
 
2.27%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
1.42
AAA
0.78
2.2%
AspATC
 
GTC
1
 
 
 
 
1
GAT
1.57
GAC
3.42
 
 
 
 
4.99%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
3.9
GAA
3.14
7.04%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.72
CAC
1.52
 
 
 
 
2.24%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
3.38
CAA
0.42
3.8%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
0.97
ATC
3.34
 
 
ATA
0.11
4.42%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
1.82
 
 
1.82%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0.8
TAC
2.26
 
 
 
 
3.06%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.18
TAG
0.04
TAA
0.06
0.28%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.1
TGC
0.55
 
 
 
 
0.65%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.56
 
 
1.56%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
-