Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

Ala tRNAs
>>>>>.>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<.<<<<<.... GGGGCTGTAGCTCAGTTGGGAGAGCGCTTGAATGGCATTCAAGAG...........GtCAGGGGTTCGATTCCCCTCTGCTCCACCA tRNA-Ala-GGC-1-1 Sc: 76.6 GGGGCTGTAGCTCAGTTGGGAGAGCGCTTGAATGGCATTCAAGAG...........GtCAGGGGTTCGATTCCCCTCTGCTCCACCA tRNA-Ala-GGC-1-2 Sc: 76.6 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCCGTAGCTCAGTTGGGAGAGCGCAGCAATCGCACTGCTGAG...........GtCAGGGGTTCGATTCCCCTCGGCTCCACCA tRNA-Ala-CGC-1-1 Sc: 81.6 >>>>>>>..>>>>........<<<<.>.>>>.......<<<.<................>.>>>.......<<<.<<<<<<<<.... GGGGCCGTAGCTCAGTTGGGAGAGCGCTAGCTTTGCAAGCTTGAG...........GtCGTCGGTTCGATCCCGTCCGGCTCCACCA tRNA-Ala-TGC-1-1 Sc: 77.2 GGGGCCGTAGCTCAGTTGGGAGAGCGCTAGCTTTGCAAGCTTGAG...........GtCGTCGGTTCGATCCCGTCCGGCTCCACCA tRNA-Ala-TGC-1-2 Sc: 77.2 GGGGCCGTAGCTCAGTTGGGAGAGCGCTAGCTTTGCAAGCTTGAG...........GtCGTCGGTTCGATCCCGTCCGGCTCCACCA tRNA-Ala-TGC-1-3 Sc: 77.2 GGGGCCGTAGCTCAGTTGGGAGAGCGCTAGCTTTGCAAGCTTGAG...........GtCGTCGGTTCGATCCCGTCCGGCTCCACCA tRNA-Ala-TGC-1-4 Sc: 77.2
Arg tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCCGTAGCTCAACTGGAtAGAGCATCTGACTACGGATCAGAAG...........GcTAGGAGTTCGAATCTCTTCGGGCGCACCA tRNA-Arg-ACG-1-1 Sc: 82.1 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGTCCGTAGCTCAGCTGGAtAGAGCGTTGGCCTCCGGAGCCAAAG...........GtCAGGGGTTCGAATCCCTTCGGACGCGCCA tRNA-Arg-CCG-1-1 Sc: 85.3 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CTCCCCGTAGCTCAGCAGGAtAGAGCGTTGGATTCCTAATCCAAAG...........GcCACAGGTTCGAATCCTGTCGGGGAGGCCA tRNA-Arg-CCT-1-1 Sc: 77.3 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCCTTAGCTCAGTTGGAtAGAGCACTCGCCTTCTAAGCGAGAT...........GtCGCTGGTTCGAATCCAGCAGGGCGCGCCA tRNA-Arg-TCT-1-1 Sc: 88.2
Asn tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TCCGGAGTAGCTCAGCGGTA.GAGCAATCGGCTGTTAACCGATTG...........GtCGGGGGTTCGAATCCCTCCTCCGGAGCCA tRNA-Asn-GTT-1-1 Sc: 85.7
Asp tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGTGTAGCTCAGTTGGTtAGAGCGCTGGCCTGTCACGCCAGAG...........GtCGCCGGTTCAAGTCCGGTCACTCGCGCCA tRNA-Asp-GTC-1-1 Sc: 86.8
Cys tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGCCGGATGGCAGAGTGGTT.ATGCAGCGGACTGCAAATCCGCGT...........ACGTCGGTTCGATTCCGGCTCCGGCCTCCA tRNA-Cys-GCA-1-1 Sc: 72.0
Gln tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TGGGGGATAGGTTAACGGTA.GACCCACGGACTCTGACTCCGTTA...........G.TCCTGGTTCGAATCCAGGTCCCCCAGCCA tRNA-Gln-CTG-1-1 Sc: 69.4 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TGGGGCGTGGCCAAGCGGTA.AGGCAGCGGCTTTTGGTGCCGCCA...........TtCGCAGGTTCGATCCCTGCCGCCCCAGCCA tRNA-Gln-TTG-1-1 Sc: 71.7
Glu tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GTCCCCATCGTCTAGCGGTccA.GGACGTCAGCCTCTCACGCTGAAA...........ACAGGGGTTCGATTCCCCTTGGGGACGCCA tRNA-Glu-CTC-1-1 Sc: 67.9 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GTCCCCATCGTCTAGCGGTccA.GGACATCAGCCTTTCACGCTGAAG...........ACACGGGTTCGATTCCCGTTGGGGACGCCA tRNA-Glu-TTC-1-1 Sc: 71.8
Gly tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGTGTAGCTCAGGGGTA.GAGCACAACCTTGCCAAGGTTGGG...........GtCGTGAGTTCGAATCTCATCACCCGCTCCA tRNA-Gly-GCC-1-1 Sc: 84.3 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGTGTAGTTCAATGGTA.GAACATCAGCTTCCCAAGCTGAAT...........A.CGAGGGTTCGATTCCCTTCACCCGCTCCA tRNA-Gly-CCC-1-1 Sc: 84.2 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGTGTAGCTCAATGGTA.GAGCCCCAGCCTTCCAAGCTGGTT...........G.TGTGGGTTCGATTCCCATCACCCGCTCCA tRNA-Gly-TCC-1-1 Sc: 84.6
His tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGCGTAGCTCAGTTGGTtAGAGCGCGTGGTTGTGGTCCATGAG...........GtCGTCGGTTCGATTCCGATCGCTCGCCCCA tRNA-His-GTG-1-1 Sc: 73.7
Ile tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCTGTAGCTCAGGTGGTtA.GAGCGCACGCCTGATAAGCGTGAG...........GtCGGCAGTTCGAGTCTGCCCAGGCCCACCA tRNA-Ile-GAT-1-1 Sc: 87.0 GGGCCTGTAGCTCAGGTGGTtA.GAGCGCACGCCTGATAAGCGTGAG...........GtCGGCAGTTCGAGTCTGCCCAGGCCCACCA tRNA-Ile-GAT-1-2 Sc: 87.0 GGGCCTGTAGCTCAGGTGGTtA.GAGCGCACGCCTGATAAGCGTGAG...........GtCGGCAGTTCGAGTCTGCCCAGGCCCACCA tRNA-Ile-GAT-1-3 Sc: 87.0 GGGCCTGTAGCTCAGGTGGTtA.GAGCGCACGCCTGATAAGCGTGAG...........GtCGGCAGTTCGAGTCTGCCCAGGCCCACCA tRNA-Ile-GAT-1-4 Sc: 87.0
Leu tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...........<<<<..>>>>>.......<<<<<.<<<<<<<.... GCGGTCGTGGCGGAACTGGTaGACGCGCAGCGTTGAGGTCGCTGTGGCC.GAAA......GGCCGTGGAAGTTCGAGTCTTCT.CGACCGCACCA tRNA-Leu-GAG-1-1 Sc: 72.3 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...........<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCCAGGTGGCGGAATTGGTaGACGCGCAGGTTTCAGGTACCTGTGGCC.GAAA......GGTCGTGGAAGTTCGAGTCTTCT.CCTGGGCACCA tRNA-Leu-CAG-1-1 Sc: 69.9 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...........<<<<..>>>>>.......<<<<<.<<<<<<<.... GCGGGCGTGGTGGAACTGGTaGACACGCTGGATTTAGGTTCCAGTGGCTT.........CGGCCGTGGGGGTTCAAATCCCTT.CGCCCGCACCA tRNA-Leu-TAG-1-1 Sc: 72.5 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...........<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCCCTGTGGCGGAACTGGTaGACGCGGCAGACTCAAAATCTGTTTCCC.GTAA......GGGAGTGGGAGTTCGACTCTCCC.CGGGGGCACCA tRNA-Leu-CAA-1-1 Sc: 77.5 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...........<<<<..>>>>>.......<<<<<.<<<<<<<.... GCGGACGTGGCGGAACCGGTaGACGCAGCAGACTTAAAATCTGCTTCTC.TTC.......GAGAGTGCGGGTTCGAGTCCCGC.CGTCCGCACCA tRNA-Leu-TAA-1-1 Sc: 76.7
Lys tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGTATAGCTCAGTTGGTAGAGCAGCTGACTCTTAATCAGCGG...........GtCGTAGGTTCGAATCCTACTGCGCCCACCA tRNA-Lys-CTT-1-1 Sc: 92.8 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GAGCCCGTAGCTCAGCTGGTAGAGCAGTTGACTTTTAATCAACGG...........GtCACGCGTTCGAATCGCGTCGGGCTCACCA tRNA-Lys-TTT-1-1 Sc: 85.0
Met/Ile2 tRNAs
>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCGGAGTAGCTCAGTT.GGTtA.GAGCAGCGGAATCATAATCCGCGT...........GtCGGGGGTTCGAGTCCCTCCTCCGCTACCA tRNA-Met-CAT-1-1 Sc: 82.5 .>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGGTGGAGCAGCCcGGT.A.GCTCGTCAGGCTCATAACCTGAAG...........GcCGCAGGTTCAAATCCTGCCCCCGCAACCA tRNA-fMet-CAT-1-1 Sc: 80.8 CGCGGGGTGGAGCAGCCcGGT.A.GCTCGTCAGGCTCATAACCTGAAG...........GcCGCAGGTTCAAATCCTGCCCCCGCAACCA tRNA-fMet-CAT-1-2 Sc: 80.8 CGCGGGGTGGAGCAGCCcGGT.A.GCTCGTCAGGCTCATAACCTGAAG...........GcCGCAGGTTCAAATCCTGCCCCCGCAACCA tRNA-fMet-CAT-1-3 Sc: 80.8 >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCTGTAGCTCAAT..GGTtA.GAGCCGGCGGCTCATAACCGTCTG...........GtTGCAGGTTCGAGTCCTGCCGGGCCCACCA tRNA-Ile2-CAT-1-1 Sc: 80.4
Phe tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCGGGTAGCTCAGCTGGTAGAGCACGTGACTGAAAATCACGGT...........GtCGGTGGTTCGACTCCGCCCCCGGGCACCA tRNA-Phe-GAA-1-1 Sc: 83.0
Pro tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGAGCGTGGCGCAGCCtGGTAGCGCACTTGACTGGGGGTCAAGGG...........GtCGCAGGTTCGAATCCTGTCGCTCCGACCA tRNA-Pro-GGG-1-1 Sc: 77.1 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGAGTGTAGCTCAGCCtGGTAGAGCACTGTCTTCGGGAGGCAGGG...........GcCGGAGGTTCGAATCCTCTCACTCCGACCA tRNA-Pro-CGG-1-1 Sc: 75.7 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGGCGTAGCTCAGCCtGGTAGAGCGTCGGCTTTGGGAGCCGAAA...........GcCGGAGGTTCGAATCCTCTCGCCCCGACCA tRNA-Pro-TGG-1-1 Sc: 84.3
SeC tRNAs
Ser tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<..>>>>>>..........<<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAGGGGTGGCCGAGTGGTcgA.TGGCGCACGCCTGGAAAGTGTGT.ATACGT.CAAAa....GCGTAT.CGTGGGTTCGAATCCCAC..CCCCTCCGCCA tRNA-Ser-GGA-1-1 Sc: 80.4 >>>>>>>..>>.>..........<.<<.>>>>>.......<<<<<..>>>>>.>........<.<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAGGGGTGCCAGAGTGGTcgA.TCGGGGCGGTCTCGAAAACCGTTGTTCCTTC........GCGGGAACCGTGGGTTCGAATCCCAC..CCCCTCCGCCA tRNA-Ser-CGA-1-1 Sc: 72.1 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>..........<<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAGGGGTGGCCGAGTGGTttA.AGGCAGCGGTCTTGAAAACCGCC.GTGGGA.GCAA.....TCTCAC.CGTGGGTTCGAATCCCAC..CCCCTCCGCCA tRNA-Ser-TGA-1-1 Sc: 91.4 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>..........<<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAGTGGTGGGTGAGTGGCtgA.AACCAGCGGTTTGCTAAACCGCCATACTGG.GAAA.....CCGGTATCGAGGGTTCGAATCCCTC..CTACTCCGCCA tRNA-Ser-GCT-1-1 Sc: 85.0
Sup tRNAs
Thr tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGCCGTAGCTCAGG.GGTA.GAGCACACCCTTGGTAAGGGTGGG...........GtCGGGTGTTCGATTCACCCCGGCGGCACCA tRNA-Thr-GGT-1-1 Sc: 80.7 GCCGCCGTAGCTCAGG.GGTA.GAGCACACCCTTGGTAAGGGTGGG...........GtCGGGTGTTCGATTCACCCCGGCGGCACCA tRNA-Thr-GGT-1-2 Sc: 80.7 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGTGGTAGCTCAGG.GGTA.GAGCAACTGATTCGTAATCAGTAG...........GtCGGGGGTTCAAATCCCTTTCACGGCACCA tRNA-Thr-CGT-1-1 Sc: 84.0 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGGATTAGCTCAGTTGGTA.GAGCACCTGATTTGTAATCAGGGG...........GtCACGGGTTCGAATCCTGTATCCGGCACCA tRNA-Thr-TGT-1-1 Sc: 94.0
Trp tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGGGTGTAGCTCAACTGGTAGAGCACCGGTCTCCAAAACCGGGG...........GtTACGGGTTCAAGTCCTGTCACCCCTGCCA tRNA-Trp-CCA-1-1 Sc: 86.1
Tyr tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>........<<<..>>>>>.......<<<<<<<<<<<<.... GGAGGGGTGGTCGAGTGGTtaA.AGGCACCGGACTGTAAATCCGGCGGGGTAAC....CCTACGCTGGTTCGAATCCAGCCCCCTCCACCA tRNA-Tyr-GTA-1-1 Sc: 88.2
Val tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGGTTAGCTCAGC.GGGA.GAGCACTACGTTGACATCGTAGGG...........GtCACTGGTTCAATCCCAGTACCGCCCACCA tRNA-Val-GAC-1-1 Sc: 75.0 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGCGTAGCTCAGC.GGGA.GAGCACTGCCTTCACACGGCAGGG...........GtCACAGGTTCAATCCCTGTCGCGCCCACCA tRNA-Val-CAC-1-1 Sc: 81.7 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGGTTAGCTCAGCTGGGA.GAGCATCTGGTTTACACCCAGAGG...........GtCGGCGGTTCGAACCCGTCACCGCCCACCA tRNA-Val-TAC-1-1 Sc: 82.4